HTA10: HTAN Stanford

Total File Size

54.8 TB

Total size of all files submitted to the DCC.

Total Number of Files

6,127

Total number of files submitted to the DCC.

Validation Errors

41

Total number of validation errors detected by the DCC dashboard.

Percent Metadata Complete

62.4%

Total percent of metadata fields completed.

Metadata Files

Synapse ID	Category	Num Records	Percent Complete Metadata
syn39283683	Biospecimen	252	20.47%
syn51718142	BulkMethylation-seqLevel1	80	73.33%
syn51934273	BulkMethylation-seqLevel2	51	43.75%
syn39282161	BulkRNA-seqLevel1	348	26.23%
syn53361674	BulkWESLevel1	506	46.61%
syn53351688	BulkWESLevel1	126	50.00%
syn53366794	BulkWESLevel2	108	20.83%
syn53359881	BulkWESLevel2	51	20.83%
syn39283850	Demographics	30	22.50%
syn39284405	Diagnosis	16	6.81%
syn39284881	Exposure	16	6.67%
syn39285152	FamilyHistory	16	25.00%
syn39285191	FollowUp	16	3.57%
syn51526303	HI-C-seqLevel1	66	100.00%
syn51702921	HI-C-seqLevel2	34	100.00%
syn58828438	HI-C-seqLevel3	2	60.00%
syn53335738	ImagingLevel1	16	83.33%
syn53339259	ImagingLevel2	39	77.78%
syn53335787	ImagingLevel3Segmentation	1394	75.00%
syn53408884	ImagingLevel4	38	71.43%
syn51703772	MassSpectrometryLevel1	479	100.00%
syn53711322	MassSpectrometryLevel1	494	90.32%
syn53711588	MassSpectrometryLevel1	214	96.77%
syn51732852	MassSpectrometryLevel3	28	100.00%
syn51732873	MassSpectrometryLevel4	28	100.00%
syn39285323	OtherAssay	159	100.00%
syn39283342	ScATAC-seqLevel1	640	74.03%
syn52177151	ScATAC-seqLevel2	17	33.61%
syn39283525	ScRNA-seqLevel1	384	78.98%
syn39285399	ScRNA-seqLevel2	128	91.57%
syn39285463	ScRNA-seqLevel3	192	83.33%
syn39285223	Therapy	16	9.52%

Metadata Validation

Validation Passed.

HTA10_05_95053031132319853029629018102753 references parent ID=HTA10_05_53101204188421544537134066374645, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_95053031132319853029629018102753 references parent ID=HTA10_05_56484537086521042372155032370527, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_99130000536536902774026526685406 references parent ID=HTA10_05_53101204188421544537134066374645, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_99130000536536902774026526685406 references parent ID=HTA10_05_56484537086521042372155032370527, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_30154170214525502022519662009012 references parent ID=HTA10_05_53101204188421544537134066374645, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_30154170214525502022519662009012 references parent ID=HTA10_05_56484537086521042372155032370527, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_30058925217174833978402335334213 references parent ID=HTA10_05_45492459155114024932157178408266, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_30058925217174833978402335334213 references parent ID=HTA10_05_05905570415073343754647861803673, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_23310505028003741090053106262039 references parent ID=HTA10_05_45492459155114024932157178408266, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_23310505028003741090053106262039 references parent ID=HTA10_05_05905570415073343754647861803673, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_65369033120306161014114206115292 references parent ID=HTA10_05_45492459155114024932157178408266, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_65369033120306161014114206115292 references parent ID=HTA10_05_05905570415073343754647861803673, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_12118016425276909459389265167434 references parent ID=HTA10_05_30012622242714415552318496605028, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_12118016425276909459389265167434 references parent ID=HTA10_05_20040451484246192734623151486833, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_90542440592215205337438548009356 references parent ID=HTA10_05_30012622242714415552318496605028, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_90542440592215205337438548009356 references parent ID=HTA10_05_20040451484246192734623151486833, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_51360363882475062701665238058231 references parent ID=HTA10_05_30012622242714415552318496605028, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_51360363882475062701665238058231 references parent ID=HTA10_05_20040451484246192734623151486833, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_70342318112540361393531410312527 references parent ID=HTA10_05_92131716174070243030005087376361, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_70342318112540361393531410312527 references parent ID=HTA10_05_63122224365351110135262081126766, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_11190379687018940862329283196471 references parent ID=HTA10_05_92131716174070243030005087376361, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_11190379687018940862329283196471 references parent ID=HTA10_05_63122224365351110135262081126766, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_04346314083246319238040475370535 references parent ID=HTA10_05_92131716174070243030005087376361, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].
HTA10_05_04346314083246319238040475370535 references parent ID=HTA10_05_63122224365351110135262081126766, but no such ID exists. [Error occurred while processing file: syn39285463 of type ScRNA-seqLevel3].

Validation Passed.

In folder: codex_level_4/A001-C-002, file name: A001-C-002__(Reg2)_reg002_compensated.csv contains unsupported characters.
In folder: codex_level_4/A015-C-202, file name: A015-C-202_(Reg1)_reg001_compensated.csv contains unsupported characters.
In folder: codex_level_4/A001-C-023, file name: A001-C-023_(Reg1)_compensated.csv contains unsupported characters.
In folder: codex_level_4/A002-C-024, file name: A002-C-024_(Reg2)_reg002_compensated.csv contains unsupported characters.
In folder: codex_level_4/A001-C-124, file name: A001-C-124_(Reg1)_reg001_compensated.csv contains unsupported characters.
In folder: lipidomics/batch-1/mode-2, file name: F-NL-CEC_(F-Asc-001).mzML contains unsupported characters.
In folder: lipidomics/batch-1/mode-1, file name: F-NL-CEC_(F-Asc-001).mzML contains unsupported characters.
In folder: lipidomics/batch-1/mode-1, file name: F-NL-TR_(F-Trans-001).mzML contains unsupported characters.
In folder: lipidomics/batch-1/mode-2, file name: F-NL-TR_(F-Trans-001).mzML contains unsupported characters.
In folder: metabolomics/Batch 1/pHILIC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/pRPLC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nRPLC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nHILIC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nRPLC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/pRPLC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nHILIC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/pHILIC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.

Folder Check

Root Path	Num Annotated Files	Num Unannotated Files
bulkATACseq_level_1	0	46
bulkATACseq_level_2	0	46
bulkATACseq_level_3	0	46
bulkRNAseq	348	0
bulkRNAseq_level_1	0	72
bulkRNAseq_level_2	0	36
bulk_methyl_seq_level_1	80	0
bulk_methyl_seq_level_2	0	51
codex_level_1	16	0
codex_level_2	39	74
codex_level_3	1393	1
codex_level_4	38	0
hic_level_1	66	0
hic_level_2	34	0
hic_level_3	2	0
lipidomics	214	0
metabolomics	494	0
proteomics_level_1	479	1
proteomics_level_3	28	1
proteomics_level_4	28	0
scatacseq_level_1	640	0
scatacseq_level_2	17	22
scatacseq_level_3	159	1
scrnaseq_level_1	384	1
scrnaseq_level_2	128	0
scrnaseq_level_3	192	0
wes_level_1	126	0
wes_level_2	51	51
wgs_level_1	506	0
wgs_level_2	108	108

Clinical Data Matrix: Tiers 1 and 2

ParticipantID	Demographics	Exposure	FamilyHistory	FollowUp	Diagnosis	Therapy
HTA10_01	1	1	1	1	1	1
HTA10_02	1	1	1	1	1	1
HTA10_03	1	1	1	1	1	1
HTA10_04	1	1	1	1	1	1
HTA10_05	1	1	1	1	1	1
HTA10_06	1	1	1	1	1	1
HTA10_07	1	1	1	1	1	1
HTA10_08	1	1	1	1	1	1
HTA10_09	1	1	1	1	1	1
HTA10_10	1	1	1	1	1	1
HTA10_11	1	1	1	1	1	1
HTA10_12	1	1	1	1	1	1
HTA10_13	1	1	1	1	1	1
HTA10_17	1	0	0	0	0	0
HTA10_18	1	1	1	1	1	1
HTA10_19	1	0	0	0	0	0
HTA10_20	1	0	0	0	0	0
HTA10_21	1	0	0	0	0	0
HTA10_22	1	1	1	1	1	1
HTA10_23	1	0	0	0	0	0
HTA10_24	1	0	0	0	0	0
HTA10_25	1	0	0	0	0	0
HTA10_26	1	0	0	0	0	0
HTA10_27	1	0	0	0	0	0
HTA10_28	1	0	0	0	0	0
HTA10_29	1	0	0	0	0	0
HTA10_30	1	0	0	0	0	0
HTA10_31	1	0	0	0	0	0
HTA10_32	1	0	0	0	0	0
HTA10_33	1	0	0	0	0	0

	Counts
Demographics	30
Exposure	15
FamilyHistory	15
FollowUp	15
Diagnosis	15
Therapy	15
MolecularTest	0
ClinicalDataTier2	0
SRRSClinicalDataTier2	0

Clinical Data Matrix: Tier 3

No data available.

ParticipantID	AcuteLym..	Neurobla..	BreastCa..	Colorect..	LungCanc..	Melanoma..	OvarianC..	Pancreat..	Prostate..	SarcomaT..
HTA10_01	0	0	0	0	0	0	0	0	0	0
HTA10_02	0	0	0	0	0	0	0	0	0	0
HTA10_03	0	0	0	0	0	0	0	0	0	0
HTA10_04	0	0	0	0	0	0	0	0	0	0
HTA10_05	0	0	0	0	0	0	0	0	0	0
HTA10_06	0	0	0	0	0	0	0	0	0	0
HTA10_07	0	0	0	0	0	0	0	0	0	0
HTA10_08	0	0	0	0	0	0	0	0	0	0
HTA10_09	0	0	0	0	0	0	0	0	0	0
HTA10_10	0	0	0	0	0	0	0	0	0	0
HTA10_11	0	0	0	0	0	0	0	0	0	0
HTA10_12	0	0	0	0	0	0	0	0	0	0
HTA10_13	0	0	0	0	0	0	0	0	0	0
HTA10_17	0	0	0	0	0	0	0	0	0	0
HTA10_18	0	0	0	0	0	0	0	0	0	0
HTA10_19	0	0	0	0	0	0	0	0	0	0
HTA10_20	0	0	0	0	0	0	0	0	0	0
HTA10_21	0	0	0	0	0	0	0	0	0	0
HTA10_22	0	0	0	0	0	0	0	0	0	0
HTA10_23	0	0	0	0	0	0	0	0	0	0
HTA10_24	0	0	0	0	0	0	0	0	0	0
HTA10_25	0	0	0	0	0	0	0	0	0	0
HTA10_26	0	0	0	0	0	0	0	0	0	0
HTA10_27	0	0	0	0	0	0	0	0	0	0
HTA10_28	0	0	0	0	0	0	0	0	0	0
HTA10_29	0	0	0	0	0	0	0	0	0	0
HTA10_30	0	0	0	0	0	0	0	0	0	0
HTA10_31	0	0	0	0	0	0	0	0	0	0
HTA10_32	0	0	0	0	0	0	0	0	0	0
HTA10_33	0	0	0	0	0	0	0	0	0	0

	Counts
AcuteLym..	0
Neurobla..	0
BreastCa..	0
Colorect..	0
LungCanc..	0
Melanoma..	0
OvarianC..	0
Pancreat..	0
Prostate..	0
SarcomaT..	0

Assay Matrix: Single Cell Data

BiospecimenID	ScRNA-seqLevel1	ScRNA-seqLevel2	ScRNA-seqLevel3	ScATAC-seqLevel1	ScATAC-seqLevel2
HTA10_01_002	0	0	0	1	0
HTA10_01_007	1	1	1	1	0
HTA10_01_014	1	1	1	1	1
HTA10_01_023	1	1	1	1	0
HTA10_01_104	1	1	1	1	0
HTA10_01_108	1	1	1	1	1
HTA10_01_119	1	1	1	1	0
HTA10_01_123	0	0	0	1	1
HTA10_01_124	1	1	1	1	0
HTA10_01_202	1	1	1	1	0
HTA10_01_203	1	1	1	1	0
HTA10_01_207	1	1	1	1	0
HTA10_01_218	0	0	0	1	0
HTA10_01_223	1	1	1	1	0
HTA10_02_010	1	1	1	1	1
HTA10_02_016	1	1	1	1	0
HTA10_02_021	1	1	1	1	0
HTA10_02_024	1	1	1	1	1
HTA10_02_025	0	0	0	1	0
HTA10_02_106	1	1	1	1	0
HTA10_02_114	1	1	1	1	0
HTA10_02_116	1	1	1	1	0
HTA10_02_121	1	1	1	1	1
HTA10_02_201	1	1	1	1	0
HTA10_02_202	0	0	0	1	1
HTA10_02_203	1	1	1	1	0
HTA10_02_204	1	1	1	1	0
HTA10_02_205	1	1	1	1	1
HTA10_02_212	1	1	1	1	0
HTA10_03_001	1	1	1	1	0
HTA10_03_002	0	0	0	1	0
HTA10_03_008	1	1	1	1	0
HTA10_03_013	0	0	0	1	0
HTA10_03_040	1	1	1	1	0
HTA10_03_043	1	1	1	1	0
HTA10_03_052	1	1	1	1	0
HTA10_03_054	1	1	1	1	0
HTA10_03_101	1	1	1	1	0
HTA10_03_108	1	1	1	1	0
HTA10_03_111	1	1	1	1	0
HTA10_03_114	1	1	1	1	0
HTA10_03_201	1	1	1	1	1
HTA10_04_001	1	1	1	1	0
HTA10_04_002	1	1	1	1	0
HTA10_04_005	1	1	1	1	0
HTA10_04_006	1	1	1	1	0
HTA10_04_008	1	1	1	1	0
HTA10_04_010	1	1	1	1	1
HTA10_04_102	0	0	0	1	0
HTA10_04_104	1	1	1	1	0
HTA10_04_106	1	1	1	1	0
HTA10_04_109	1	1	1	1	1
HTA10_04_202	1	1	1	1	0
HTA10_04_203	1	1	1	1	0
HTA10_04_204	1	1	1	1	0
HTA10_04_206	0	0	0	1	0
HTA10_04_208	1	1	1	1	0
HTA10_05_007	1	1	0	1	1
HTA10_05_034	1	1	0	1	1
HTA10_05_072	1	1	0	1	1
HTA10_05_091	1	1	0	1	1
HTA10_08_008	1	1	1	1	0
HTA10_08_015	1	1	1	1	0
HTA10_09_111	1	1	1	1	0
HTA10_10_018	1	1	1	1	1
HTA10_10_023	1	1	1	1	0
HTA10_11_112	1	1	1	1	0
HTA10_12_113	1	1	1	1	0
HTA10_13_114	0	0	0	1	0
HTA10_18_013	1	1	1	1	0
HTA10_18_020	1	1	1	1	0
HTA10_22_002	1	1	1	1	1

	Counts
ScRNA-seqLevel1	62
ScRNA-seqLevel2	62
ScRNA-seqLevel3	58
ScRNA-seqLevel4	0
ScATAC-seqLevel1	72
ScATAC-seqLevel2	17
ScATAC-seqLevel3	0
ScATAC-seqLevel4	0

Assay Matrix: Bulk Data

BiospecimenID	BulkRNA-seqLevel1	BulkWESLevel1	BulkWESLevel2	BulkMethylation-seqLevel1	BulkMethylation-seqLevel2	HI-C-seqLevel1	HI-C-seqLevel2	HI-C-seqLevel3
HTA10_01_004	1	1	1	1	1	0	0	0
HTA10_01_005	1	1	1	1	1	0	0	0
HTA10_01_007	1	1	1	1	1	1	1	1
HTA10_01_008	0	0	0	0	0	1	1	1
HTA10_01_011	0	0	0	0	0	1	1	1
HTA10_01_013	0	0	0	0	0	1	1	1
HTA10_01_019	0	0	0	0	0	1	1	1
HTA10_01_021	1	1	1	1	1	0	0	0
HTA10_01_023	0	0	0	0	0	1	1	1
HTA10_01_024	0	0	0	0	0	1	1	1
HTA10_01_102	1	1	1	0	0	0	0	0
HTA10_01_107	1	1	1	0	0	0	0	0
HTA10_01_113	0	0	0	1	1	0	0	0
HTA10_01_122	1	1	1	0	0	0	0	0
HTA10_01_124	1	1	1	0	0	0	0	0
HTA10_01_206	0	0	0	1	1	0	0	0
HTA10_01_210	1	1	1	0	0	0	0	0
HTA10_01_214	1	1	1	0	0	0	0	0
HTA10_01_219	1	1	1	0	0	0	0	0
HTA10_01_222	1	1	1	0	0	0	0	0
HTA10_01_900	0	1	1	1	1	0	0	0
HTA10_02_001	0	0	0	0	0	1	1	1
HTA10_02_002	0	0	0	0	0	1	1	1
HTA10_02_006	0	0	0	0	0	1	1	1
HTA10_02_010	1	1	1	1	1	1	1	1
HTA10_02_012	0	0	0	1	1	1	1	1
HTA10_02_013	0	0	0	0	0	1	1	1
HTA10_02_016	1	1	1	0	0	0	0	0
HTA10_02_019	1	1	1	0	0	0	0	0
HTA10_02_020	1	1	1	0	0	0	0	0
HTA10_02_021	1	1	1	0	0	0	0	0
HTA10_02_022	1	1	1	0	0	0	0	0
HTA10_02_023	1	1	1	0	0	0	0	0
HTA10_02_024	1	1	1	0	0	0	0	0
HTA10_02_025	1	1	1	0	0	0	0	0
HTA10_02_102	1	1	1	0	0	0	0	0
HTA10_02_103	1	1	1	0	0	0	0	0
HTA10_02_107	1	1	1	0	0	0	0	0
HTA10_02_111	0	0	0	1	1	0	0	0
HTA10_02_116	1	1	1	1	1	0	0	0
HTA10_02_121	1	1	1	1	1	0	0	0
HTA10_02_122	1	1	1	0	0	1	1	1
HTA10_02_123	1	1	1	0	0	0	0	0
HTA10_02_201	1	1	1	0	0	0	0	0
HTA10_02_202	1	1	1	0	0	0	0	0
HTA10_02_203	1	1	1	0	0	0	0	0
HTA10_02_204	1	1	1	1	1	0	0	0
HTA10_02_207	1	1	1	0	0	0	0	0
HTA10_02_209	1	1	1	0	0	0	0	0
HTA10_02_211	1	1	1	0	0	0	0	0
HTA10_02_212	1	1	1	1	1	1	1	1
HTA10_02_213	1	1	1	0	0	0	0	0
HTA10_02_900	0	1	1	1	1	0	0	0
HTA10_03_001	1	1	1	1	1	0	0	0
HTA10_03_004	0	0	0	0	0	1	1	1
HTA10_03_012	0	0	0	0	0	1	1	1
HTA10_03_037	0	0	0	1	1	0	0	0
HTA10_03_038	0	0	0	1	1	1	1	1
HTA10_03_040	0	0	0	0	0	1	1	1
HTA10_03_041	0	0	0	0	0	1	1	1
HTA10_03_044	0	0	0	1	1	0	0	0
HTA10_03_045	0	0	0	0	0	1	1	1
HTA10_03_046	0	0	0	0	0	1	1	1
HTA10_03_052	1	1	1	1	1	0	0	0
HTA10_03_053	0	0	0	0	0	1	1	1
HTA10_03_054	0	0	0	0	0	1	1	1
HTA10_03_055	1	1	1	0	0	0	0	0
HTA10_03_114	1	1	1	0	0	0	0	0
HTA10_03_115	0	0	0	1	1	0	0	0
HTA10_03_201	1	1	1	0	0	0	0	0
HTA10_03_202	0	0	0	1	1	0	0	0
HTA10_03_900	0	1	1	1	1	0	0	0
HTA10_04_001	1	1	1	0	0	0	0	0
HTA10_04_002	1	1	1	1	1	0	0	0
HTA10_04_004	0	0	0	0	0	1	1	1
HTA10_04_006	0	0	0	0	0	1	1	1
HTA10_04_008	1	1	1	1	1	0	0	0
HTA10_04_010	1	1	1	0	0	1	1	1
HTA10_04_102	1	1	1	0	0	0	0	0
HTA10_04_109	1	1	1	0	0	0	0	0
HTA10_04_203	0	0	0	1	1	0	0	0
HTA10_04_206	1	1	1	0	0	0	0	0
HTA10_04_900	0	1	1	1	1	0	0	0
HTA10_05_002	1	1	1	0	0	0	0	0
HTA10_05_004	1	1	1	0	0	0	0	0
HTA10_05_006	0	1	1	0	0	0	0	0
HTA10_05_007	1	1	1	1	1	0	0	0
HTA10_05_008	1	1	1	0	0	0	0	0
HTA10_05_009	1	1	1	0	0	0	0	0
HTA10_05_011	0	1	1	0	0	0	0	0
HTA10_05_020	0	1	1	0	0	0	0	0
HTA10_05_025	1	1	1	0	0	0	0	0
HTA10_05_026	0	1	1	0	0	0	0	0
HTA10_05_027	1	1	1	0	0	0	0	0
HTA10_05_031	0	1	1	0	0	0	0	0
HTA10_05_032	0	1	1	0	0	0	0	0
HTA10_05_034	0	0	0	1	1	0	0	0
HTA10_05_037	1	1	1	0	0	0	0	0
HTA10_05_038	1	1	1	0	0	0	0	0
HTA10_05_039	1	1	1	0	0	0	0	0
HTA10_05_040	1	1	1	0	0	0	0	0
HTA10_05_046	0	1	1	0	0	0	0	0
HTA10_05_053	1	1	1	0	0	0	0	0
HTA10_05_056	0	1	1	0	0	0	0	0
HTA10_05_057	0	1	1	0	0	0	0	0
HTA10_05_061	1	1	1	0	0	0	0	0
HTA10_05_063	1	1	1	0	0	0	0	0
HTA10_05_065	1	1	1	0	0	0	0	0
HTA10_05_072	1	1	1	0	0	0	0	0
HTA10_05_073	1	1	1	0	0	0	0	0
HTA10_05_074	0	1	1	0	0	0	0	0
HTA10_05_076	1	1	1	0	0	0	0	0
HTA10_05_080	1	1	1	0	0	0	0	0
HTA10_05_084	0	1	1	0	0	0	0	0
HTA10_05_088	1	1	1	1	1	0	0	0
HTA10_05_092	1	1	1	0	0	0	0	0
HTA10_05_095	1	1	1	0	0	0	0	0
HTA10_05_098	1	1	1	0	0	0	0	0
HTA10_05_101	0	1	1	0	0	0	0	0
HTA10_05_102	1	1	1	0	0	0	0	0
HTA10_05_104	1	0	0	0	0	0	0	0
HTA10_05_105	1	1	1	0	0	0	0	0
HTA10_05_106	1	0	0	0	0	0	0	0
HTA10_05_107	1	1	1	0	0	0	0	0
HTA10_05_108	1	1	1	0	0	0	0	0
HTA10_05_117	0	1	1	0	0	0	0	0
HTA10_05_118	0	1	1	0	0	0	0	0
HTA10_05_900	0	1	1	1	1	0	0	0
HTA10_06_002	1	1	1	0	0	0	0	0
HTA10_06_003	0	1	1	0	0	0	0	0
HTA10_06_004	1	1	1	0	0	0	0	0
HTA10_06_005	1	1	1	0	0	0	0	0
HTA10_06_006	1	1	1	0	0	0	0	0
HTA10_06_009	0	1	1	0	0	0	0	0
HTA10_06_013	1	1	1	0	0	0	0	0
HTA10_06_014	1	1	1	0	0	0	0	0
HTA10_06_024	1	1	1	0	0	0	0	0
HTA10_06_025	1	1	1	0	0	0	0	0
HTA10_06_031	0	1	1	0	0	0	0	0
HTA10_06_032	0	1	1	0	0	0	0	0
HTA10_06_034	0	1	1	0	0	0	0	0
HTA10_06_038	0	1	1	0	0	0	0	0
HTA10_06_039	1	1	1	0	0	0	0	0
HTA10_06_043	1	1	1	0	0	0	0	0
HTA10_06_044	1	1	1	0	0	0	0	0
HTA10_06_045	1	1	1	0	0	0	0	0
HTA10_06_049	1	1	1	0	0	0	0	0
HTA10_06_051	1	1	1	0	0	0	0	0
HTA10_06_055	1	1	1	0	0	0	0	0
HTA10_06_061	1	1	1	0	0	0	0	0
HTA10_06_062	1	1	1	0	0	0	0	0
HTA10_06_063	0	1	1	0	0	0	0	0
HTA10_06_064	0	1	1	0	0	0	0	0
HTA10_06_065	1	1	1	0	0	0	0	0
HTA10_06_069	0	1	1	0	0	0	0	0
HTA10_06_073	0	1	1	0	0	0	0	0
HTA10_06_079	1	1	1	0	0	0	0	0
HTA10_06_104	0	1	1	0	0	0	0	0
HTA10_06_105	1	1	1	0	0	0	0	0
HTA10_06_108	1	1	1	0	0	0	0	0
HTA10_06_109	1	1	1	0	0	0	0	0
HTA10_06_110	1	1	1	0	0	0	0	0
HTA10_06_124	0	1	1	0	0	0	0	0
HTA10_06_126	0	1	1	0	0	0	0	0
HTA10_06_900	0	1	1	0	0	0	0	0
HTA10_07_001	1	0	0	0	0	0	0	0
HTA10_07_006	1	0	0	0	0	0	0	0
HTA10_07_101	1	0	0	0	0	0	0	0
HTA10_07_201	1	0	0	0	0	0	0	0
HTA10_07_301	1	0	0	0	0	0	0	0
HTA10_07_401	1	0	0	0	0	0	0	0
HTA10_07_406	1	0	0	0	0	0	0	0
HTA10_07_501	1	0	0	0	0	0	0	0
HTA10_17_001	0	0	0	1	1	0	0	0
HTA10_17_003	0	0	0	1	1	0	0	0
HTA10_19_002	0	0	0	1	1	0	0	0
HTA10_20_002	0	0	0	1	1	0	0	0
HTA10_20_018	0	0	0	1	1	0	0	0
HTA10_20_019	0	0	0	1	1	0	0	0
HTA10_20_020	0	0	0	1	1	0	0	0
HTA10_20_021	0	0	0	1	1	0	0	0
HTA10_20_022	0	0	0	1	1	0	0	0
HTA10_20_023	0	0	0	1	1	0	0	0
HTA10_20_024	0	0	0	1	1	0	0	0
HTA10_21_016	0	0	0	1	1	0	0	0
HTA10_21_018	0	0	0	1	1	0	0	0
HTA10_23_012	0	0	0	1	1	0	0	0
HTA10_23_111	0	0	0	1	1	0	0	0
HTA10_23_211	0	0	0	1	1	0	0	0
HTA10_24_001	0	0	0	1	1	0	0	0
HTA10_25_001	0	0	0	1	1	0	0	0
HTA10_26_001	0	0	0	1	1	0	0	0
HTA10_27_001	0	0	0	1	1	0	0	0
HTA10_28_001	0	0	0	0	0	1	1	1
HTA10_29_001	0	0	0	0	0	1	1	1
HTA10_30_001	0	0	0	0	0	1	1	1
HTA10_31_001	0	0	0	0	0	1	1	1
HTA10_32_001	0	0	0	0	0	1	1	1
HTA10_33_001	0	0	0	0	0	1	1	1

	Counts
BulkRNA-seqLevel1	109
BulkRNA-seqLevel2	0
BulkRNA-seqLevel3	0
BulkRNA-seqLevel4	0
BulkWESLevel1	132
BulkWESLevel2	132
BulkWESLevel3	0
BulkWESLevel4	0
BulkMethylation-seqLevel1	51
BulkMethylation-seqLevel2	51
BulkMethylation-seqLevel3	0
BulkMethylation-seqLevel4	0
HI-C-seqLevel1	33
HI-C-seqLevel2	33
HI-C-seqLevel3	33
HI-C-seqLevel4	0

Assay Matrix: Core Imaging

BiospecimenID	ImagingLevel1	ImagingLevel2	ImagingLevel3Segmentation	ImagingLevel4
HTA10_01_002	1	1	1	1
HTA10_01_007	1	1	1	1
HTA10_01_023	1	1	1	1
HTA10_01_104	0	1	1	1
HTA10_01_108	0	1	1	1
HTA10_01_119	1	1	1	1
HTA10_01_124	1	1	1	1
HTA10_02_016	0	1	1	1
HTA10_02_021	0	1	1	1
HTA10_02_024	1	1	1	1
HTA10_02_025	0	1	1	1
HTA10_02_106	0	1	1	1
HTA10_02_203	1	1	1	1
HTA10_02_204	0	1	1	1
HTA10_02_205	1	1	1	1
HTA10_02_211	0	1	1	1
HTA10_02_212	0	1	1	1
HTA10_03_002	1	1	1	1
HTA10_04_005	1	1	1	1
HTA10_04_202	1	1	1	1
HTA10_04_204	0	1	1	1
HTA10_04_206	0	1	1	1
HTA10_04_208	0	1	1	1
HTA10_05_072	1	1	1	1
HTA10_06_024	0	1	1	1
HTA10_06_025	0	1	1	1
HTA10_06_043	0	1	1	1
HTA10_06_044	0	1	1	1
HTA10_06_051	0	1	1	1
HTA10_06_055	0	1	1	1
HTA10_06_061	0	1	1	1
HTA10_06_062	0	1	1	1
HTA10_06_105	0	1	1	1
HTA10_07_101	1	1	1	1
HTA10_07_301	1	1	1	1
HTA10_07_401	1	1	1	1
HTA10_11_112	1	1	1	1

	Counts
ImagingLevel1	16
ImagingLevel2	37
ImagingLevel3Image	0
ImagingLevel3Channels	0
ImagingLevel3Segmentation	37
ImagingLevel4	37
SRRSImagingLevel2	0

Assay Matrix: Other

BiospecimenID	MassSpectrometryLevel1	MassSpectrometryLevel3	MassSpectrometryLevel4	OtherAssay
HTA10_01_002	0	0	0	1
HTA10_01_004	1	1	1	0
HTA10_01_005	1	1	1	0
HTA10_01_007	1	0	0	1
HTA10_01_014	0	0	0	1
HTA10_01_021	1	1	1	0
HTA10_01_023	0	0	0	1
HTA10_01_102	1	1	1	0
HTA10_01_104	0	0	0	1
HTA10_01_107	1	1	1	0
HTA10_01_108	0	0	0	1
HTA10_01_119	0	0	0	1
HTA10_01_122	1	1	1	0
HTA10_01_123	0	0	0	1
HTA10_01_124	1	1	1	1
HTA10_01_202	0	0	0	1
HTA10_01_203	0	0	0	1
HTA10_01_207	0	0	0	1
HTA10_01_210	1	1	1	0
HTA10_01_214	1	1	1	0
HTA10_01_218	0	0	0	1
HTA10_01_219	1	1	1	0
HTA10_01_222	1	1	1	0
HTA10_01_223	0	0	0	1
HTA10_02_010	1	1	1	1
HTA10_02_016	1	1	1	1
HTA10_02_019	1	1	1	0
HTA10_02_021	1	1	1	1
HTA10_02_023	1	1	1	0
HTA10_02_024	1	1	1	1
HTA10_02_025	1	1	1	1
HTA10_02_103	1	1	1	0
HTA10_02_106	0	0	0	1
HTA10_02_107	1	1	1	0
HTA10_02_114	0	0	0	1
HTA10_02_116	1	1	1	1
HTA10_02_121	1	1	1	1
HTA10_02_122	1	1	1	0
HTA10_02_123	1	1	1	0
HTA10_02_201	1	1	1	1
HTA10_02_202	1	1	1	1
HTA10_02_203	1	1	1	1
HTA10_02_204	1	1	1	1
HTA10_02_205	0	0	0	1
HTA10_02_207	1	1	1	0
HTA10_02_209	1	1	1	0
HTA10_02_211	1	1	1	0
HTA10_02_212	1	1	1	1
HTA10_02_213	1	1	1	0
HTA10_03_001	1	1	1	1
HTA10_03_002	0	0	0	1
HTA10_03_008	0	0	0	1
HTA10_03_013	0	0	0	1
HTA10_03_040	0	0	0	1
HTA10_03_043	0	0	0	1
HTA10_03_052	1	1	1	1
HTA10_03_054	0	0	0	1
HTA10_03_055	1	1	1	0
HTA10_03_101	0	0	0	1
HTA10_03_108	0	0	0	1
HTA10_03_111	0	0	0	1
HTA10_03_114	1	1	1	1
HTA10_03_201	1	1	1	1
HTA10_04_001	1	1	1	1
HTA10_04_002	1	1	1	1
HTA10_04_005	0	0	0	1
HTA10_04_006	0	0	0	1
HTA10_04_008	1	1	1	1
HTA10_04_010	1	1	1	1
HTA10_04_102	1	1	1	1
HTA10_04_104	0	0	0	1
HTA10_04_106	0	0	0	1
HTA10_04_109	1	1	1	1
HTA10_04_202	0	0	0	1
HTA10_04_203	0	0	0	1
HTA10_04_204	0	0	0	1
HTA10_04_206	1	1	1	1
HTA10_04_208	0	0	0	1
HTA10_05_002	1	1	1	0
HTA10_05_004	1	1	1	0
HTA10_05_007	1	1	1	1
HTA10_05_008	1	1	1	0
HTA10_05_009	1	0	0	0
HTA10_05_025	1	1	1	0
HTA10_05_027	1	1	1	0
HTA10_05_034	0	0	0	1
HTA10_05_037	1	1	1	0
HTA10_05_038	1	1	1	0
HTA10_05_039	1	1	1	0
HTA10_05_040	1	1	1	0
HTA10_05_046	1	1	1	0
HTA10_05_053	1	1	1	0
HTA10_05_061	1	1	1	0
HTA10_05_063	1	1	1	0
HTA10_05_065	1	1	1	0
HTA10_05_072	1	1	1	1
HTA10_05_073	1	1	1	0
HTA10_05_074	1	1	1	0
HTA10_05_076	1	1	1	0
HTA10_05_088	1	1	1	0
HTA10_05_091	0	0	0	1
HTA10_05_092	1	1	1	0
HTA10_05_095	1	1	1	0
HTA10_05_098	1	1	1	0
HTA10_05_103	1	1	1	0
HTA10_05_104	1	1	1	0
HTA10_05_105	1	1	1	0
HTA10_05_106	1	0	0	0
HTA10_06_002	1	1	1	0
HTA10_06_004	1	1	1	0
HTA10_06_005	1	1	1	0
HTA10_06_024	1	1	1	0
HTA10_06_025	1	1	1	0
HTA10_06_032	1	1	1	0
HTA10_06_043	1	1	1	0
HTA10_06_044	1	1	1	0
HTA10_06_045	1	1	1	0
HTA10_06_049	1	1	1	0
HTA10_06_051	1	1	1	0
HTA10_06_055	1	1	1	0
HTA10_06_061	1	1	1	0
HTA10_06_062	1	1	1	0
HTA10_06_065	1	1	1	0
HTA10_06_105	1	1	1	0
HTA10_06_107	1	1	1	0
HTA10_06_110	1	1	1	0
HTA10_07_001	1	1	1	0
HTA10_07_006	1	1	1	0
HTA10_07_101	1	1	1	0
HTA10_07_201	1	1	1	0
HTA10_07_301	1	0	0	0
HTA10_07_401	1	0	0	0
HTA10_07_406	1	0	0	0
HTA10_07_501	1	0	0	0
HTA10_08_008	0	0	0	1
HTA10_08_015	0	0	0	1
HTA10_09_111	0	0	0	1
HTA10_10_018	0	0	0	1
HTA10_10_023	0	0	0	1
HTA10_11_112	0	0	0	1
HTA10_12_113	0	0	0	1
HTA10_13_114	0	0	0	1
HTA10_18_013	0	0	0	1
HTA10_18_020	0	0	0	1
HTA10_22_002	0	0	0	1
HTA10_EXT0_000	1	0	0	0

	Counts
10xVisiumSpatialTranscriptomics-RNA-seqLevel1	0
10xVisiumSpatialTranscriptomics-RNA-seqLevel2	0
10xVisiumSpatialTranscriptomics-AuxiliaryFiles	0
10xVisiumSpatialTranscriptomics-RNA-seqLevel3	0
10xVisiumSpatialTranscriptomics-RNA-seqLevel4	0
Slide-seqLevel1	0
Slide-seqLevel2	0
Slide-seqLevel3	0
ElectronMicroscopyLevel1	0
ElectronMicroscopyLevel2	0
ElectronMicroscopyLevel3	0
ElectronMicroscopyLevel4	0
MassSpectrometryLevel1	101
MassSpectrometryLevel2	0
MassSpectrometryLevel3	93
MassSpectrometryLevel4	93
MassSpectrometryAuxiliaryFile	0
RPPALevel1	0
RPPALevel2	0
RPPALevel3	0
RPPALevel4	0
OtherAssay	72
ExSeqMinimal	0
AccessoryManifest	0

DCC Debugging

Cytoscape SIF Network

HTA10: HTAN Stanford

Total File Size

54.8 TB

Total Number of Files

6,127

Validation Errors

41

Percent Metadata Complete

62.4%

Metadata Files

Metadata Validation

All Atlas Categories are supported by the Dashboard. Passed

At least one Demographics file found. Passed

Non-Demographic clinical data use same IDs as demographics file. Passed

At least one Biospecimen file found. Passed

HTAN IDs follow the SOP. Passed

Links connect. Failed: 24 errors

Synapse Entity IDs are Specified for Assays. Passed

File names follow Cancer Data Service (CDS) conventions. Failed: 17 warnings

Folder Check

Clinical Data Matrix: Tiers 1 and 2

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Clinical Data Matrix: Tier 3

View Details

Assay Matrix: Single Cell Data

View Details

Assay Matrix: Bulk Data

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Assay Matrix: Core Imaging

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Assay Matrix: Other

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DCC Debugging