Total size of all files submitted to the DCC.
Total number of files submitted to the DCC.
Total number of validation errors detected by the DCC dashboard.
Total percent of metadata fields completed.
| Synapse ID | Category | Num Records | Percent Complete Metadata |
|---|---|---|---|
| syn41745520 | Biospecimen | 402 | 38.16% |
| syn41745688 | Demographics | 2 | 23.33% |
| syn41745802 | Diagnosis | 2 | 16.28% |
| syn41745888 | Exposure | 2 | 13.79% |
| syn41745941 | FamilyHistory | 2 | 21.43% |
| syn41745973 | FollowUp | 2 | 5.45% |
| syn41746037 | ImagingLevel2 | 232 | 77.07% |
| syn41746051 | ImagingLevel2 | 7 | 74.53% |
| syn41746067 | ImagingLevel2 | 12 | 74.09% |
| syn47878101 | ImagingLevel3Segmentation | 25 | 76.92% |
| syn48015494 | ImagingLevel4 | 25 | 73.33% |
| syn41746009 | MolecularTest | 3 | 10.26% |
| syn41745996 | Therapy | 2 | 15.00% |
| In folder: imaging_level_2/WD-76847_Stanford/Processed/Segmented/compensated, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.txt contains unsupported characters. |
| In folder: imaging_level_2/WD-76847_Stanford/Processed/Segmented/compensated, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.csv contains unsupported characters. |
| In folder: imaging_level_2/WD-76847_Stanford/Processed/Segmented/compensated, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.fcs contains unsupported characters. |
| In folder: imaging_level_2/WD-76846_Stanford/Processed/Segmented/Segmented/compensated, file name: Normal colon_FF_CODEX_03122020_reg001_compensated.txt contains unsupported characters. |
| In folder: imaging_level_2/WD-76846_Stanford/Processed/Segmented/Segmented/compensated, file name: Normal colon_FF_CODEX_03122020_reg001_compensated.fcs contains unsupported characters. |
| In folder: imaging_level_2/WD-76847_Stanford/Processed/Stitched, file name: Normal colon_FFPE_CODEX_02262020_reg001.tif contains unsupported characters. |
| In folder: imaging_level_2/WD-76846_Stanford/Processed/Segmented/Segmented/compensated, file name: Normal colon_FF_CODEX_03122020_reg001_compensated.csv contains unsupported characters. |
| In folder: imaging_level_2/WD-76846_Stanford/Processed/Stitched, file name: Normal colon_FF_CODEX_03122020_reg001.tif contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.csv contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.txt contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.fcs contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed/Segmented/compensated, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.fcs contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed/Segmented/compensated, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.csv contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed/Segmented/compensated, file name: Normal colon_FFPE_CODEX_02262020_reg001_compensated.txt contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed, file name: Normal colon_FFPE_CODEX_02262020_reg001.tif contains unsupported characters. |
| In folder: imaging_level_2/WD-76845_Stanford/Processed/Stitched, file name: Normal colon_FFPE_CODEX_02262020_reg001.tif contains unsupported characters. |
| Root Path | Num Annotated Files | Num Unannotated Files |
|---|---|---|
| imaging_level_2 | 232 | 35472 |
| imaging_level_3_segmentation | 25 | 0 |
| imaging_level_4 | 25 | 0 |
| sardana_phase_1_ffpe_level_2 | 12 | 12 |
| sardana_phase_1_ff_level_2 | 7 | 7 |
| ParticipantID | Demographics | Exposure | FamilyHistory | FollowUp | Diagnosis | Therapy | MolecularTest | ClinicalDataTier2 | SRRSClinicalDataTier2 |
|---|---|---|---|---|---|---|---|---|---|
| HTA13_1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| HTA13_2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Counts | |
|---|---|
| Demographics | 2 |
| Exposure | 2 |
| FamilyHistory | 2 |
| FollowUp | 2 |
| Diagnosis | 2 |
| Therapy | 2 |
| MolecularTest | 2 |
| ClinicalDataTier2 | 0 |
| SRRSClinicalDataTier2 | 0 |
| ParticipantID | AcuteLym.. | Neurobla.. | BreastCa.. | Colorect.. | LungCanc.. | Melanoma.. | OvarianC.. | Pancreat.. | Prostate.. | SarcomaT.. |
|---|---|---|---|---|---|---|---|---|---|---|
| HTA13_1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Counts | |
|---|---|
| AcuteLym.. | 0 |
| Neurobla.. | 0 |
| BreastCa.. | 0 |
| Colorect.. | 0 |
| LungCanc.. | 0 |
| Melanoma.. | 0 |
| OvarianC.. | 0 |
| Pancreat.. | 0 |
| Prostate.. | 0 |
| SarcomaT.. | 0 |
| BiospecimenID | ImagingLevel1 | ImagingLevel2 | ImagingLevel3Image | ImagingLevel3Channels | ImagingLevel3Segmentation | ImagingLevel4 | SRRSImagingLevel2 |
|---|---|---|---|---|---|---|---|
| HTA13_1_5 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_6 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_7 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_9 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_10 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_11 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_17 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_18 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_23 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_24 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_28 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_29 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_32 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_33 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_37 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_38 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_42 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_43 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_47 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_48 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_49 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_50 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_51 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_52 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_53 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_54 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_55 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_56 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_57 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_58 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_62 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_63 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_67 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_68 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_72 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_73 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_77 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_78 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_79 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_80 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_81 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_82 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_83 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_86 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_87 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_88 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_89 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_90 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_93 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_94 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_95 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_100 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_101 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_105 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_106 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_109 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_110 | 0 | 1 | 0 | 0 | 1 | 1 | 0 |
| HTA13_1_117 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_118 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_130 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_133 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_134 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_139 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_141 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_208 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_212 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_215 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_216 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_223 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_225 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_265 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_1_266 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_7 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_77 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_78 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_81 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_82 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_91 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_131 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| HTA13_2_132 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| Counts | |
|---|---|
| ImagingLevel1 | 0 |
| ImagingLevel2 | 80 |
| ImagingLevel3Image | 0 |
| ImagingLevel3Channels | 0 |
| ImagingLevel3Segmentation | 25 |
| ImagingLevel4 | 25 |
| SRRSImagingLevel2 | 0 |