HTA15: TNP SRRS

Total File Size
1.1 TB

Total size of all files submitted to the DCC.

Total Number of Files
337

Total number of files submitted to the DCC.

Validation Errors
7

Total number of validation errors detected by the DCC dashboard.

Percent Metadata Complete
63.8%

Total percent of metadata fields completed.

Metadata Files

Synapse ID Category Num Records Percent Complete Metadata
syn52590408 Biospecimen 38 26.58%
syn51607146 SRRSBiospecimen 180 68.93%
syn51757910 SRRSBiospecimen 6 49.55%
syn52799092 SRRSBiospecimen 150 52.25%
syn51607133 SRRSClinicalDataTier2 6 60.85%
syn51757887 SRRSClinicalDataTier2 4 55.81%
syn52799106 SRRSClinicalDataTier2 8 73.55%
syn50295784 SRRSImagingLevel2 6 87.88%
syn51907277 SRRSImagingLevel2 72 65.12%
syn52702413 SRRSImagingLevel2 65 88.24%
syn52751109 ScATAC-seqLevel1 56 66.82%
syn52588608 ScRNA-seqLevel1 63 83.31%

Metadata Validation

Validation Passed.

Validation Passed.

Cannot assess. No Demographics File.

Validation Passed.

Validation Passed.

HTA15_12342_1203 references parent ID=HTA15_12342_1201, but no such ID exists. [Error occurred while processing file: syn52590408 of type Biospecimen].
HTA15_12254_1203 references parent ID=HTA15_12254_1201, but no such ID exists. [Error occurred while processing file: syn52590408 of type Biospecimen].
HTA15_100005_007 references parent ID=HTA15_100005, but no such ID exists. [Error occurred while processing file: syn52590408 of type Biospecimen].

Validation Passed.

In folder: WashUniv_imaging_level_2, file name: HT112CRL T1 A1-A5 23.svs contains unsupported characters.
In folder: WashUniv_imaging_level_2, file name: HT112CRC T2 A1-A5 33.svs contains unsupported characters.
In folder: WashUniv_imaging_level_2, file name: HT112CRC T3 A1-A5.svs contains unsupported characters.

Folder Check

Root Path Num Annotated Files Num Unannotated Files

Assay Matrix: Single Cell Data





BiospecimenID ScRNA-seqLevel1 ScRNA-seqLevel2 ScRNA-seqLevel3 ScRNA-seqLevel4 ScATAC-seqLevel1 ScATAC-seqLevel2 ScATAC-seqLevel3 ScATAC-seqLevel4
HTA15_12254_1203 0 0 0 0 1 0 0 0
HTA15_12254_1206 1 0 0 0 0 0 0 0
HTA15_12342_1203 0 0 0 0 1 0 0 0
HTA15_12342_1206 1 0 0 0 0 0 0 0
HTA15_51430_1503 0 0 0 0 1 0 0 0
HTA15_51430_1506 1 0 0 0 0 0 0 0
HTA15_51430_1513 1 0 0 0 0 0 0 0
HTA15_51430_1514 0 0 0 0 1 0 0 0
HTA15_51703_1503 0 0 0 0 1 0 0 0
HTA15_51703_1506 1 0 0 0 0 0 0 0
HTA15_51703_1603 1 0 0 0 0 0 0 0
HTA15_51703_1604 0 0 0 0 1 0 0 0
HTA15_100004_114001 1 0 0 0 1 0 0 0
HTA15_100005_007001 1 0 0 0 1 0 0 0
Counts
ScRNA-seqLevel1 8
ScRNA-seqLevel2 0
ScRNA-seqLevel3 0
ScRNA-seqLevel4 0
ScATAC-seqLevel1 8
ScATAC-seqLevel2 0
ScATAC-seqLevel3 0
ScATAC-seqLevel4 0

Assay Matrix: Core Imaging





BiospecimenID ImagingLevel1 ImagingLevel2 ImagingLevel3Image ImagingLevel3Channels ImagingLevel3Segmentation ImagingLevel4 SRRSImagingLevel2
HTA15_30001_7000027 0 0 0 0 0 0 1
HTA15_30001_7000028 0 0 0 0 0 0 1
HTA15_30001_7000029 0 0 0 0 0 0 1
HTA15_30001_7000030 0 0 0 0 0 0 1
HTA15_30001_7000031 0 0 0 0 0 0 1
HTA15_30001_7000032 0 0 0 0 0 0 1
HTA15_30001_7000033 0 0 0 0 0 0 1
HTA15_30001_7000034 0 0 0 0 0 0 1
HTA15_30001_7000035 0 0 0 0 0 0 1
HTA15_30001_7000036 0 0 0 0 0 0 1
HTA15_30001_7000037 0 0 0 0 0 0 1
HTA15_30001_7000038 0 0 0 0 0 0 1
HTA15_30001_7000039 0 0 0 0 0 0 1
HTA15_30001_7100040 0 0 0 0 0 0 1
HTA15_30001_7100041 0 0 0 0 0 0 1
HTA15_30001_7100042 0 0 0 0 0 0 1
HTA15_30001_7100043 0 0 0 0 0 0 1
HTA15_30001_7100044 0 0 0 0 0 0 1
HTA15_30001_7100045 0 0 0 0 0 0 1
HTA15_30001_7100046 0 0 0 0 0 0 1
HTA15_30001_7100047 0 0 0 0 0 0 1
HTA15_30002_7000035 0 0 0 0 0 0 1
HTA15_30002_7000036 0 0 0 0 0 0 1
HTA15_30002_7000037 0 0 0 0 0 0 1
HTA15_30002_7000038 0 0 0 0 0 0 1
HTA15_30002_7000039 0 0 0 0 0 0 1
HTA15_30002_7000040 0 0 0 0 0 0 1
HTA15_30002_7000041 0 0 0 0 0 0 1
HTA15_30002_7000042 0 0 0 0 0 0 1
HTA15_30002_7100043 0 0 0 0 0 0 1
HTA15_30002_7100044 0 0 0 0 0 0 1
HTA15_30002_7100045 0 0 0 0 0 0 1
HTA15_30002_7100046 0 0 0 0 0 0 1
HTA15_30005_7000031 0 0 0 0 0 0 1
HTA15_30005_7000032 0 0 0 0 0 0 1
HTA15_30005_7000033 0 0 0 0 0 0 1
HTA15_30005_7000034 0 0 0 0 0 0 1
HTA15_30005_7000035 0 0 0 0 0 0 1
HTA15_30005_7000036 0 0 0 0 0 0 1
HTA15_30005_7000037 0 0 0 0 0 0 1
HTA15_30005_7000038 0 0 0 0 0 0 1
HTA15_30005_7000039 0 0 0 0 0 0 1
HTA15_30005_7000040 0 0 0 0 0 0 1
HTA15_30005_7100041 0 0 0 0 0 0 1
HTA15_30005_7100042 0 0 0 0 0 0 1
HTA15_30005_7100043 0 0 0 0 0 0 1
HTA15_30005_7100044 0 0 0 0 0 0 1
HTA15_30005_7100045 0 0 0 0 0 0 1
HTA15_30005_7100046 0 0 0 0 0 0 1
HTA15_30005_7100047 0 0 0 0 0 0 1
HTA15_30005_7100048 0 0 0 0 0 0 1
HTA15_30005_7100049 0 0 0 0 0 0 1
HTA15_30005_7100050 0 0 0 0 0 0 1
HTA15_30007_7000017 0 0 0 0 0 0 1
HTA15_30007_7000018 0 0 0 0 0 0 1
HTA15_30007_7000019 0 0 0 0 0 0 1
HTA15_30007_7000021 0 0 0 0 0 0 1
HTA15_30007_7000023 0 0 0 0 0 0 1
HTA15_30007_7000025 0 0 0 0 0 0 1
HTA15_30007_7100027 0 0 0 0 0 0 1
HTA15_30007_7100028 0 0 0 0 0 0 1
HTA15_30007_7100029 0 0 0 0 0 0 1
HTA15_30007_7100030 0 0 0 0 0 0 1
HTA15_30007_7100031 0 0 0 0 0 0 1
HTA15_30007_7100032 0 0 0 0 0 0 1
HTA15_51430_1131 0 0 0 0 0 0 1
HTA15_51430_1141 0 0 0 0 0 0 1
HTA15_51430_1151 0 0 0 0 0 0 1
HTA15_51430_1161 0 0 0 0 0 0 1
HTA15_51430_1171 0 0 0 0 0 0 1
HTA15_51430_1181 0 0 0 0 0 0 1
HTA15_51430_1191 0 0 0 0 0 0 1
HTA15_51430_1201 0 0 0 0 0 0 1
HTA15_51430_1301 0 0 0 0 0 0 1
HTA15_51477_1211 0 0 0 0 0 0 1
HTA15_51477_1221 0 0 0 0 0 0 1
HTA15_51477_1231 0 0 0 0 0 0 1
HTA15_51477_1241 0 0 0 0 0 0 1
HTA15_51477_1271 0 0 0 0 0 0 1
HTA15_51477_1281 0 0 0 0 0 0 1
HTA15_51477_1291 0 0 0 0 0 0 1
HTA15_51477_1301 0 0 0 0 0 0 1
HTA15_51477_1311 0 0 0 0 0 0 1
HTA15_51477_1321 0 0 0 0 0 0 1
HTA15_51484_1341 0 0 0 0 0 0 1
HTA15_51484_1342 0 0 0 0 0 0 1
HTA15_51484_1343 0 0 0 0 0 0 1
HTA15_51484_1344 0 0 0 0 0 0 1
HTA15_51484_1351 0 0 0 0 0 0 1
HTA15_51484_1352 0 0 0 0 0 0 1
HTA15_51484_1353 0 0 0 0 0 0 1
HTA15_51484_1361 0 0 0 0 0 0 1
HTA15_51484_1371 0 0 0 0 0 0 1
HTA15_51484_1381 0 0 0 0 0 0 1
HTA15_51484_1391 0 0 0 0 0 0 1
HTA15_51484_1401 0 0 0 0 0 0 1
HTA15_51484_1701 0 0 0 0 0 0 1
HTA15_51703_1201 0 0 0 0 0 0 1
HTA15_51703_1301 0 0 0 0 0 0 1
HTA15_51716_1211 0 0 0 0 0 0 1
HTA15_51716_1221 0 0 0 0 0 0 1
HTA15_51716_1231 0 0 0 0 0 0 1
HTA15_51716_1241 0 0 0 0 0 0 1
HTA15_51716_1251 0 0 0 0 0 0 1
HTA15_51716_1261 0 0 0 0 0 0 1
HTA15_51716_1271 0 0 0 0 0 0 1
HTA15_51716_1281 0 0 0 0 0 0 1
HTA15_51716_1291 0 0 0 0 0 0 1
HTA15_51716_1301 0 0 0 0 0 0 1
HTA15_51716_1311 0 0 0 0 0 0 1
HTA15_51716_1321 0 0 0 0 0 0 1
HTA15_51748_1311 0 0 0 0 0 0 1
HTA15_51748_1312 0 0 0 0 0 0 1
HTA15_51748_1321 0 0 0 0 0 0 1
HTA15_51748_1322 0 0 0 0 0 0 1
HTA15_51748_1331 0 0 0 0 0 0 1
HTA15_51748_1332 0 0 0 0 0 0 1
HTA15_51748_1341 0 0 0 0 0 0 1
HTA15_51748_1351 0 0 0 0 0 0 1
HTA15_51748_1361 0 0 0 0 0 0 1
HTA15_51748_1362 0 0 0 0 0 0 1
HTA15_51748_1401 0 0 0 0 0 0 1
HTA15_51833_1111 0 0 0 0 0 0 1
HTA15_51833_1141 0 0 0 0 0 0 1
HTA15_51833_1701 0 0 0 0 0 0 1
HTA15_51883_1101 0 0 0 0 0 0 1
HTA15_51883_1111 0 0 0 0 0 0 1
HTA15_51883_1121 0 0 0 0 0 0 1
HTA15_51883_1191 0 0 0 0 0 0 1
HTA15_51883_1201 0 0 0 0 0 0 1
HTA15_51883_1211 0 0 0 0 0 0 1
HTA15_51883_1221 0 0 0 0 0 0 1
HTA15_51883_1231 0 0 0 0 0 0 1
HTA15_51883_1241 0 0 0 0 0 0 1
HTA15_51883_1701 0 0 0 0 0 0 1
HTA15_51883_1801 0 0 0 0 0 0 1
HTA15_51883_1901 0 0 0 0 0 0 1
HTA15_100001_032 0 0 0 0 0 0 1
HTA15_100001_034 0 0 0 0 0 0 1
HTA15_100002_033 0 0 0 0 0 0 1
HTA15_100002_091 0 0 0 0 0 0 1
HTA15_100003_101 0 0 0 0 0 0 1
HTA15_100004_208 0 0 0 0 0 0 1
Counts
ImagingLevel1 0
ImagingLevel2 0
ImagingLevel3Image 0
ImagingLevel3Channels 0
ImagingLevel3Segmentation 0
ImagingLevel4 0
SRRSImagingLevel2 143

gantt dateFormat X axisFormat %s section HTA15_100004 Transverse colon Surgical Resection:milestone,0,0 section HTA15_100005 Descending colon Surgical Resection:milestone,0,0 section HTA15_51430 Lymph nodes of axilla or arm Right Surgical Resection:milestone,0,0 section HTA15_51703 skin of lower limb and hip Right Excision:milestone,0,0

DCC Debugging


Auto-generated via the HTAN Data Coordinating Center (DCC).