HTA8: HTAN MSK

Total File Size
2.5 TB

Total size of all files submitted to the DCC.

Total Number of Files
1,335

Total number of files submitted to the DCC.

Validation Errors
9

Total number of validation errors detected by the DCC dashboard.

Percent Metadata Complete
50.3%

Total percent of metadata fields completed.

Metadata Files

Synapse ID Category Num Records Percent Complete Metadata
syn39256250 Biospecimen 107 23.22%
syn39253974 Demographics 99 47.03%
syn39254633 Diagnosis 97 15.19%
syn39255034 Exposure 89 17.44%
syn39255093 FamilyHistory 161 72.49%
syn39255125 FollowUp 99 11.55%
syn39256312 ImagingLevel2 58 76.09%
syn39255845 MolecularTest 187 19.14%
syn39256349 OtherAssay 115 100.00%
syn39256367 OtherAssay 4 100.00%
syn39253853 ScRNA-seqLevel1 404 80.00%
syn51039758 ScRNA-seqLevel1 40 89.47%
syn39253429 ScRNA-seqLevel2 57 100.00%
syn51071078 ScRNA-seqLevel2 11 94.74%
syn39253517 ScRNA-seqLevel3 228 82.35%
syn51071082 ScRNA-seqLevel3 11 93.75%
syn51039914 ScRNA-seqLevel4 7 100.00%
syn39253706 ScRNA-seqLevel4 270 81.82%
syn39255232 Therapy 355 53.37%

Metadata Validation

Validation Passed.

Validation Passed.

Validation Passed.

Validation Passed.

Validation Passed.

Validation Passed.

Validation Passed.

In folder: single_cell_RNAseq_level_4/cellxgene Metadata and Collection/MSK_HTAN_UPDATED_04222022, file name: adata_tcell_010920-cell-labels (1).csv contains unsupported characters.
In folder: single_cell_RNAseq_level_4/cellxgene Metadata and Collection/MSK_HTAN_UPDATED_04222022, file name: MSK-HTAN-Collection (1).txt contains unsupported characters.
In folder: single_cell_RNAseq_level_4/combined.mnnc/ambient.all.50/idents, file name: ambient.B cell.all.50.010920.pdf contains unsupported characters.
In folder: single_cell_RNAseq_level_4/combined.mnnc/ambient.all.50/idents, file name: ambient.T cell.all.50.010920.pdf contains unsupported characters.
In folder: single_cell_RNAseq_level_4/combined.mnnc/ambient.all.50/idents, file name: ambient.Plasma cell.all.50.010920.pdf contains unsupported characters.
In folder: single_cell_RNAseq_level_4/tcell, file name: vectra.N+_vs_N-.csv contains unsupported characters.
In folder: single_cell_RNAseq_level_4/combined.mnnc/ambient.all.50/idents, file name: ambient.B cell.all.50.010920.txt contains unsupported characters.
In folder: single_cell_RNAseq_level_4/combined.mnnc/ambient.all.50/idents, file name: ambient.Plasma cell.all.50.010920.txt contains unsupported characters.
In folder: single_cell_RNAseq_level_4/combined.mnnc/ambient.all.50/idents, file name: ambient.T cell.all.50.010920.txt contains unsupported characters.

Folder Check

Root Path Num Annotated Files Num Unannotated Files
glasner_etal_single_cell_RNAseq_level_1 40 0
glasner_etal_single_cell_RNAseq_level_2 11 0
glasner_etal_single_cell_RNAseq_level_3 11 0
glasner_etal_single_cell_RNAseq_level_4 7 0
h5ad_cellxgene 0 11
mibi_level_2 116 2
mibi_level_3 115 0
mibi_level_4 4 0
single_cell_RNAseq_level_1 404 0
single_cell_RNAseq_level_2 57 0
single_cell_RNAseq_level_3 228 0
single_cell_RNAseq_level_4 270 59

Clinical Data Matrix: Tiers 1 and 2





ParticipantID Demographics Exposure FamilyHistory FollowUp Diagnosis Therapy MolecularTest ClinicalDataTier2 SRRSClinicalDataTier2
HTA8_1001 1 1 1 1 1 1 1 0 0
HTA8_1002 1 1 1 1 1 1 0 0 0
HTA8_1003 1 1 1 1 1 1 0 0 0
HTA8_1004 1 1 1 1 1 1 0 0 0
HTA8_1005 1 1 1 1 1 1 1 0 0
HTA8_1006 1 1 1 1 1 1 0 0 0
HTA8_1007 1 1 1 1 1 1 0 0 0
HTA8_1008 1 1 1 1 1 1 0 0 0
HTA8_1009 1 1 1 1 1 1 0 0 0
HTA8_1010 1 1 1 1 1 1 0 0 0
HTA8_1011 1 1 1 1 1 1 0 0 0
HTA8_1012 1 1 1 1 1 1 0 0 0
HTA8_1013 1 1 1 1 1 1 0 0 0
HTA8_1014 1 1 1 1 1 1 0 0 0
HTA8_1015 1 1 1 1 1 1 0 0 0
HTA8_1016 1 1 1 1 1 1 0 0 0
HTA8_1017 1 1 1 1 1 1 0 0 0
HTA8_1018 1 1 1 1 1 1 0 0 0
HTA8_1019 1 1 1 1 1 1 0 0 0
HTA8_1020 1 1 1 1 1 1 0 0 0
HTA8_1021 1 1 1 1 1 1 0 0 0
HTA8_1022 1 1 1 1 1 1 0 0 0
HTA8_1023 1 1 1 1 1 1 0 0 0
HTA8_1024 1 1 1 1 1 1 0 0 0
HTA8_1025 1 1 1 1 1 1 1 0 0
HTA8_1026 1 1 1 1 1 1 0 0 0
HTA8_1027 1 1 1 1 1 1 0 0 0
HTA8_1028 1 0 1 1 1 1 1 0 0
HTA8_1029 1 0 1 1 1 1 1 0 0
HTA8_1030 1 0 1 1 1 1 1 0 0
HTA8_1031 1 0 1 1 1 1 1 0 0
HTA8_1032 1 0 1 1 1 1 1 0 0
HTA8_1033 1 0 1 1 1 1 1 0 0
HTA8_1034 1 0 1 1 1 1 1 0 0
HTA8_1035 1 0 1 1 1 1 1 0 0
HTA8_1036 1 0 1 1 1 1 1 0 0
HTA8_1037 1 0 1 1 1 1 1 0 0
HTA8_2001 1 1 1 1 1 1 0 0 0
HTA8_2002 1 1 1 1 1 1 0 0 0
HTA8_2003 1 1 1 1 1 1 0 0 0
HTA8_2004 1 1 1 1 1 1 0 0 0
HTA8_2005 1 1 1 1 1 1 0 0 0
HTA8_2006 1 1 1 1 1 1 0 0 0
HTA8_2007 1 1 1 1 1 1 0 0 0
HTA8_2008 1 1 1 1 1 1 0 0 0
HTA8_2009 1 1 1 1 1 1 0 0 0
HTA8_2010 1 1 1 1 1 1 0 0 0
HTA8_2011 1 1 1 1 1 1 0 0 0
HTA8_2012 1 1 1 1 1 1 0 0 0
HTA8_2013 1 1 1 1 1 1 0 0 0
HTA8_2014 1 1 1 1 1 1 0 0 0
HTA8_2015 1 1 1 1 1 1 0 0 0
HTA8_2016 1 1 1 1 1 1 0 0 0
HTA8_2017 1 1 1 1 1 1 0 0 0
HTA8_2018 1 1 1 1 1 1 0 0 0
HTA8_2019 1 1 1 1 1 1 0 0 0
HTA8_2020 1 1 1 1 1 1 1 0 0
HTA8_2021 1 1 1 1 1 1 1 0 0
HTA8_2022 1 1 1 1 1 1 1 0 0
HTA8_2023 1 1 1 1 1 1 1 0 0
HTA8_2024 1 1 1 1 1 1 1 0 0
HTA8_2025 1 1 1 1 1 1 1 0 0
HTA8_2026 1 1 1 1 1 1 1 0 0
HTA8_2027 1 1 1 1 1 1 1 0 0
HTA8_2028 1 1 1 1 1 1 1 0 0
HTA8_2029 1 1 1 1 1 1 1 0 0
HTA8_2030 1 1 1 1 1 1 1 0 0
HTA8_2031 1 1 1 1 1 1 1 0 0
HTA8_2032 1 1 1 1 1 1 1 0 0
HTA8_2033 1 1 1 1 1 1 1 0 0
HTA8_2034 1 1 1 1 1 1 1 0 0
HTA8_2035 1 1 1 1 1 1 1 0 0
HTA8_2036 1 1 1 1 1 1 1 0 0
HTA8_2037 1 1 1 1 1 1 1 0 0
HTA8_2038 1 1 1 1 1 1 1 0 0
HTA8_2039 1 1 1 1 1 1 1 0 0
HTA8_2040 1 1 1 1 1 1 1 0 0
HTA8_2041 1 1 1 1 1 1 1 0 0
HTA8_2042 1 1 1 1 1 1 1 0 0
HTA8_2043 1 1 1 1 1 1 1 0 0
HTA8_2044 1 1 1 1 1 1 1 0 0
HTA8_2045 1 1 1 1 1 1 1 0 0
HTA8_2046 1 1 1 1 1 1 1 0 0
HTA8_2047 1 1 1 1 1 1 1 0 0
HTA8_2048 1 1 1 1 1 1 1 0 0
HTA8_2049 1 1 1 1 1 1 1 0 0
HTA8_2050 1 1 1 1 1 1 1 0 0
HTA8_2051 1 1 1 1 1 1 1 0 0
HTA8_2052 1 1 1 1 1 1 1 0 0
HTA8_2053 1 1 1 1 1 1 1 0 0
HTA8_2054 1 1 1 1 1 1 1 0 0
HTA8_2055 1 1 1 1 1 1 1 0 0
HTA8_2056 1 1 1 1 1 1 1 0 0
HTA8_2057 1 1 1 1 0 0 1 0 0
HTA8_2058 1 1 1 1 0 0 1 0 0
HTA8_3001 1 1 1 1 1 1 0 0 0
HTA8_3002 1 1 1 1 1 1 0 0 0
HTA8_3003 1 1 1 1 1 1 0 0 0
HTA8_3004 1 1 1 1 1 1 0 0 0
Counts
Demographics 99
Exposure 89
FamilyHistory 99
FollowUp 99
Diagnosis 97
Therapy 97
MolecularTest 52
ClinicalDataTier2 0
SRRSClinicalDataTier2 0

Clinical Data Matrix: Tier 3

No data available.

ParticipantID AcuteLym.. Neurobla.. BreastCa.. Colorect.. LungCanc.. Melanoma.. OvarianC.. Pancreat.. Prostate.. SarcomaT..
HTA8_1001 0 0 0 0 0 0 0 0 0 0
HTA8_1002 0 0 0 0 0 0 0 0 0 0
HTA8_1003 0 0 0 0 0 0 0 0 0 0
HTA8_1004 0 0 0 0 0 0 0 0 0 0
HTA8_1005 0 0 0 0 0 0 0 0 0 0
HTA8_1006 0 0 0 0 0 0 0 0 0 0
HTA8_1007 0 0 0 0 0 0 0 0 0 0
HTA8_1008 0 0 0 0 0 0 0 0 0 0
HTA8_1009 0 0 0 0 0 0 0 0 0 0
HTA8_1010 0 0 0 0 0 0 0 0 0 0
HTA8_1011 0 0 0 0 0 0 0 0 0 0
HTA8_1012 0 0 0 0 0 0 0 0 0 0
HTA8_1013 0 0 0 0 0 0 0 0 0 0
HTA8_1014 0 0 0 0 0 0 0 0 0 0
HTA8_1015 0 0 0 0 0 0 0 0 0 0
HTA8_1016 0 0 0 0 0 0 0 0 0 0
HTA8_1017 0 0 0 0 0 0 0 0 0 0
HTA8_1018 0 0 0 0 0 0 0 0 0 0
HTA8_1019 0 0 0 0 0 0 0 0 0 0
HTA8_1020 0 0 0 0 0 0 0 0 0 0
HTA8_1021 0 0 0 0 0 0 0 0 0 0
HTA8_1022 0 0 0 0 0 0 0 0 0 0
HTA8_1023 0 0 0 0 0 0 0 0 0 0
HTA8_1024 0 0 0 0 0 0 0 0 0 0
HTA8_1025 0 0 0 0 0 0 0 0 0 0
HTA8_1026 0 0 0 0 0 0 0 0 0 0
HTA8_1027 0 0 0 0 0 0 0 0 0 0
HTA8_1028 0 0 0 0 0 0 0 0 0 0
HTA8_1029 0 0 0 0 0 0 0 0 0 0
HTA8_1030 0 0 0 0 0 0 0 0 0 0
HTA8_1031 0 0 0 0 0 0 0 0 0 0
HTA8_1032 0 0 0 0 0 0 0 0 0 0
HTA8_1033 0 0 0 0 0 0 0 0 0 0
HTA8_1034 0 0 0 0 0 0 0 0 0 0
HTA8_1035 0 0 0 0 0 0 0 0 0 0
HTA8_1036 0 0 0 0 0 0 0 0 0 0
HTA8_1037 0 0 0 0 0 0 0 0 0 0
HTA8_2001 0 0 0 0 0 0 0 0 0 0
HTA8_2002 0 0 0 0 0 0 0 0 0 0
HTA8_2003 0 0 0 0 0 0 0 0 0 0
HTA8_2004 0 0 0 0 0 0 0 0 0 0
HTA8_2005 0 0 0 0 0 0 0 0 0 0
HTA8_2006 0 0 0 0 0 0 0 0 0 0
HTA8_2007 0 0 0 0 0 0 0 0 0 0
HTA8_2008 0 0 0 0 0 0 0 0 0 0
HTA8_2009 0 0 0 0 0 0 0 0 0 0
HTA8_2010 0 0 0 0 0 0 0 0 0 0
HTA8_2011 0 0 0 0 0 0 0 0 0 0
HTA8_2012 0 0 0 0 0 0 0 0 0 0
HTA8_2013 0 0 0 0 0 0 0 0 0 0
HTA8_2014 0 0 0 0 0 0 0 0 0 0
HTA8_2015 0 0 0 0 0 0 0 0 0 0
HTA8_2016 0 0 0 0 0 0 0 0 0 0
HTA8_2017 0 0 0 0 0 0 0 0 0 0
HTA8_2018 0 0 0 0 0 0 0 0 0 0
HTA8_2019 0 0 0 0 0 0 0 0 0 0
HTA8_2020 0 0 0 0 0 0 0 0 0 0
HTA8_2021 0 0 0 0 0 0 0 0 0 0
HTA8_2022 0 0 0 0 0 0 0 0 0 0
HTA8_2023 0 0 0 0 0 0 0 0 0 0
HTA8_2024 0 0 0 0 0 0 0 0 0 0
HTA8_2025 0 0 0 0 0 0 0 0 0 0
HTA8_2026 0 0 0 0 0 0 0 0 0 0
HTA8_2027 0 0 0 0 0 0 0 0 0 0
HTA8_2028 0 0 0 0 0 0 0 0 0 0
HTA8_2029 0 0 0 0 0 0 0 0 0 0
HTA8_2030 0 0 0 0 0 0 0 0 0 0
HTA8_2031 0 0 0 0 0 0 0 0 0 0
HTA8_2032 0 0 0 0 0 0 0 0 0 0
HTA8_2033 0 0 0 0 0 0 0 0 0 0
HTA8_2034 0 0 0 0 0 0 0 0 0 0
HTA8_2035 0 0 0 0 0 0 0 0 0 0
HTA8_2036 0 0 0 0 0 0 0 0 0 0
HTA8_2037 0 0 0 0 0 0 0 0 0 0
HTA8_2038 0 0 0 0 0 0 0 0 0 0
HTA8_2039 0 0 0 0 0 0 0 0 0 0
HTA8_2040 0 0 0 0 0 0 0 0 0 0
HTA8_2041 0 0 0 0 0 0 0 0 0 0
HTA8_2042 0 0 0 0 0 0 0 0 0 0
HTA8_2043 0 0 0 0 0 0 0 0 0 0
HTA8_2044 0 0 0 0 0 0 0 0 0 0
HTA8_2045 0 0 0 0 0 0 0 0 0 0
HTA8_2046 0 0 0 0 0 0 0 0 0 0
HTA8_2047 0 0 0 0 0 0 0 0 0 0
HTA8_2048 0 0 0 0 0 0 0 0 0 0
HTA8_2049 0 0 0 0 0 0 0 0 0 0
HTA8_2050 0 0 0 0 0 0 0 0 0 0
HTA8_2051 0 0 0 0 0 0 0 0 0 0
HTA8_2052 0 0 0 0 0 0 0 0 0 0
HTA8_2053 0 0 0 0 0 0 0 0 0 0
HTA8_2054 0 0 0 0 0 0 0 0 0 0
HTA8_2055 0 0 0 0 0 0 0 0 0 0
HTA8_2056 0 0 0 0 0 0 0 0 0 0
HTA8_2057 0 0 0 0 0 0 0 0 0 0
HTA8_2058 0 0 0 0 0 0 0 0 0 0
HTA8_3001 0 0 0 0 0 0 0 0 0 0
HTA8_3002 0 0 0 0 0 0 0 0 0 0
HTA8_3003 0 0 0 0 0 0 0 0 0 0
HTA8_3004 0 0 0 0 0 0 0 0 0 0
Counts
AcuteLym.. 0
Neurobla.. 0
BreastCa.. 0
Colorect.. 0
LungCanc.. 0
Melanoma.. 0
OvarianC.. 0
Pancreat.. 0
Prostate.. 0
SarcomaT.. 0

Assay Matrix: Single Cell Data





BiospecimenID ScRNA-seqLevel1 ScRNA-seqLevel2 ScRNA-seqLevel3 ScRNA-seqLevel4 ScATAC-seqLevel1 ScATAC-seqLevel2 ScATAC-seqLevel3 ScATAC-seqLevel4
HTA8_1001_1 1 1 1 1 0 0 0 0
HTA8_1002_1 1 1 1 1 0 0 0 0
HTA8_1003_1 1 1 1 1 0 0 0 0
HTA8_1004_1 1 1 1 1 0 0 0 0
HTA8_1005_1 1 1 1 1 0 0 0 0
HTA8_1005_2 1 1 1 1 0 0 0 0
HTA8_1005_3 1 1 1 1 0 0 0 0
HTA8_1006_1 1 1 1 1 0 0 0 0
HTA8_1007_1 1 1 1 1 0 0 0 0
HTA8_1008_1 1 1 1 1 0 0 0 0
HTA8_1009_1 1 1 1 1 0 0 0 0
HTA8_1009_2 1 1 1 1 0 0 0 0
HTA8_1009_3 1 1 1 1 0 0 0 0
HTA8_1010_1 1 1 1 1 0 0 0 0
HTA8_1011_1 1 1 1 1 0 0 0 0
HTA8_1012_1 1 1 1 1 0 0 0 0
HTA8_1013_1 1 1 1 1 0 0 0 0
HTA8_1014_1 1 1 1 1 0 0 0 0
HTA8_1015_1 1 1 1 1 0 0 0 0
HTA8_1016_1 1 1 1 1 0 0 0 0
HTA8_1017_1 1 1 1 1 0 0 0 0
HTA8_1018_1 1 1 1 1 0 0 0 0
HTA8_1019_1 1 1 1 1 0 0 0 0
HTA8_1020_1 1 1 1 1 0 0 0 0
HTA8_1021_1 1 1 1 1 0 0 0 0
HTA8_1022_1 1 1 1 1 0 0 0 0
HTA8_1023_1 1 1 1 1 0 0 0 0
HTA8_1024_1 1 1 1 1 0 0 0 0
HTA8_1025_1 1 1 1 1 0 0 0 0
HTA8_1026_1 1 1 1 1 0 0 0 0
HTA8_1027_1 1 1 1 1 0 0 0 0
HTA8_1028_1 1 1 1 1 0 0 0 0
HTA8_1029_1 1 1 1 1 0 0 0 0
HTA8_1030_1 1 1 1 1 0 0 0 0
HTA8_1031_1 1 1 1 1 0 0 0 0
HTA8_1032_1 1 1 1 1 0 0 0 0
HTA8_1033_1 1 1 1 1 0 0 0 0
HTA8_1034_1 1 1 1 1 0 0 0 0
HTA8_1035_1 1 1 1 1 0 0 0 0
HTA8_1036_1 1 1 1 1 0 0 0 0
HTA8_1037_1 1 1 1 1 0 0 0 0
HTA8_2001_1 1 1 1 1 0 0 0 0
HTA8_2002_1 1 1 1 1 0 0 0 0
HTA8_2003_1 1 1 1 1 0 0 0 0
HTA8_2004_1 1 1 1 1 0 0 0 0
HTA8_2005_1 1 1 1 1 0 0 0 0
HTA8_2005_2 1 1 1 1 0 0 0 0
HTA8_2005_3 1 1 1 1 0 0 0 0
HTA8_2006_1 1 1 1 1 0 0 0 0
HTA8_2007_1 1 1 1 1 0 0 0 0
HTA8_2007_2 1 1 1 1 0 0 0 0
HTA8_2008_1 1 1 1 1 0 0 0 0
HTA8_2009_1 1 1 1 1 0 0 0 0
HTA8_2010_1 1 1 1 1 0 0 0 0
HTA8_2010_2 1 1 1 1 0 0 0 0
HTA8_2011_1 1 1 1 1 0 0 0 0
HTA8_2012_1 1 1 1 1 0 0 0 0
HTA8_2013_1 1 1 1 1 0 0 0 0
HTA8_2014_1 1 1 1 1 0 0 0 0
HTA8_2015_1 1 1 1 1 0 0 0 0
HTA8_2016_1 1 1 1 1 0 0 0 0
HTA8_2017_1 1 1 1 1 0 0 0 0
HTA8_2018_1 1 1 1 1 0 0 0 0
HTA8_2019_1 1 1 1 1 0 0 0 0
HTA8_3001_1 1 1 1 1 0 0 0 0
HTA8_3002_1 1 1 1 1 0 0 0 0
HTA8_3003_1 1 1 1 1 0 0 0 0
HTA8_3004_1 1 1 1 1 0 0 0 0
Counts
ScRNA-seqLevel1 68
ScRNA-seqLevel2 68
ScRNA-seqLevel3 68
ScRNA-seqLevel4 68
ScATAC-seqLevel1 0
ScATAC-seqLevel2 0
ScATAC-seqLevel3 0
ScATAC-seqLevel4 0

Assay Matrix: Core Imaging





BiospecimenID ImagingLevel1 ImagingLevel2 ImagingLevel3Image ImagingLevel3Channels ImagingLevel3Segmentation ImagingLevel4 SRRSImagingLevel2
HTA8_2020_1 0 1 0 0 0 0 0
HTA8_2021_1 0 1 0 0 0 0 0
HTA8_2022_1 0 1 0 0 0 0 0
HTA8_2023_1 0 1 0 0 0 0 0
HTA8_2024_1 0 1 0 0 0 0 0
HTA8_2025_1 0 1 0 0 0 0 0
HTA8_2026_1 0 1 0 0 0 0 0
HTA8_2027_1 0 1 0 0 0 0 0
HTA8_2028_1 0 1 0 0 0 0 0
HTA8_2029_1 0 1 0 0 0 0 0
HTA8_2030_1 0 1 0 0 0 0 0
HTA8_2031_1 0 1 0 0 0 0 0
HTA8_2032_1 0 1 0 0 0 0 0
HTA8_2033_1 0 1 0 0 0 0 0
HTA8_2034_1 0 1 0 0 0 0 0
HTA8_2035_1 0 1 0 0 0 0 0
HTA8_2036_1 0 1 0 0 0 0 0
HTA8_2037_1 0 1 0 0 0 0 0
HTA8_2038_1 0 1 0 0 0 0 0
HTA8_2039_1 0 1 0 0 0 0 0
HTA8_2040_1 0 1 0 0 0 0 0
HTA8_2041_1 0 1 0 0 0 0 0
HTA8_2042_1 0 1 0 0 0 0 0
HTA8_2043_1 0 1 0 0 0 0 0
HTA8_2044_1 0 1 0 0 0 0 0
HTA8_2045_1 0 1 0 0 0 0 0
HTA8_2046_1 0 1 0 0 0 0 0
HTA8_2047_1 0 1 0 0 0 0 0
HTA8_2048_1 0 1 0 0 0 0 0
HTA8_2049_1 0 1 0 0 0 0 0
HTA8_2050_1 0 1 0 0 0 0 0
HTA8_2051_1 0 1 0 0 0 0 0
HTA8_2052_1 0 1 0 0 0 0 0
HTA8_2053_1 0 1 0 0 0 0 0
HTA8_2054_1 0 1 0 0 0 0 0
HTA8_2055_1 0 1 0 0 0 0 0
HTA8_2056_1 0 1 0 0 0 0 0
Counts
ImagingLevel1 0
ImagingLevel2 37
ImagingLevel3Image 0
ImagingLevel3Channels 0
ImagingLevel3Segmentation 0
ImagingLevel4 0
SRRSImagingLevel2 0

Assay Matrix: Other





BiospecimenID 10xVisiumSpatialTranscriptomics-RNA-seqLevel1 10xVisiumSpatialTranscriptomics-RNA-seqLevel2 10xVisiumSpatialTranscriptomics-AuxiliaryFiles 10xVisiumSpatialTranscriptomics-RNA-seqLevel3 10xVisiumSpatialTranscriptomics-RNA-seqLevel4 Slide-seqLevel1 Slide-seqLevel2 Slide-seqLevel3 ElectronMicroscopyLevel1 ElectronMicroscopyLevel2 ElectronMicroscopyLevel3 ElectronMicroscopyLevel4 MassSpectrometryLevel1 MassSpectrometryLevel2 MassSpectrometryLevel3 MassSpectrometryLevel4 MassSpectrometryAuxiliaryFile RPPALevel1 RPPALevel2 RPPALevel3 RPPALevel4 OtherAssay ExSeqMinimal AccessoryManifest
HTA8_2020_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2021_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2022_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2023_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2024_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2025_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2026_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2027_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2028_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2029_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2030_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2031_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2032_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2033_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2034_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2035_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2036_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2037_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2038_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2039_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2040_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2041_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2042_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2043_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2044_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2045_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2046_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2047_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2048_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2049_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2050_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2051_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2052_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2053_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2054_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2055_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
HTA8_2056_1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
Counts
10xVisiumSpatialTranscriptomics-RNA-seqLevel1 0
10xVisiumSpatialTranscriptomics-RNA-seqLevel2 0
10xVisiumSpatialTranscriptomics-AuxiliaryFiles 0
10xVisiumSpatialTranscriptomics-RNA-seqLevel3 0
10xVisiumSpatialTranscriptomics-RNA-seqLevel4 0
Slide-seqLevel1 0
Slide-seqLevel2 0
Slide-seqLevel3 0
ElectronMicroscopyLevel1 0
ElectronMicroscopyLevel2 0
ElectronMicroscopyLevel3 0
ElectronMicroscopyLevel4 0
MassSpectrometryLevel1 0
MassSpectrometryLevel2 0
MassSpectrometryLevel3 0
MassSpectrometryLevel4 0
MassSpectrometryAuxiliaryFile 0
RPPALevel1 0
RPPALevel2 0
RPPALevel3 0
RPPALevel4 0
OtherAssay 37
ExSeqMinimal 0
AccessoryManifest 0

DCC Debugging