HTA10: HTAN Stanford

Total File Size
55.0 TB

Total size of all files submitted to the DCC.

Total Number of Files
6,526

Total number of files submitted to the DCC.

Validation Errors
85

Total number of validation errors detected by the DCC dashboard.

Percent Metadata Complete
59.8%

Total percent of metadata fields completed.

Metadata Files

Synapse ID Category Num Records Percent Complete Metadata
syn66312808 Biospecimen 35 29.93%
syn39283683 Biospecimen 288 20.64%
syn51718142 BulkMethylation-seqLevel1 80 73.33%
syn51934273 BulkMethylation-seqLevel2 51 40.62%
syn39282161 BulkRNA-seqLevel1 348 26.23%
syn60979705 BulkRNA-seqLevel1 72 28.57%
syn60986363 BulkRNA-seqLevel3 36 81.25%
syn53351688 BulkWESLevel1 126 50.00%
syn53361674 BulkWESLevel1 506 46.61%
syn53359881 BulkWESLevel2 51 20.83%
syn53366794 BulkWESLevel2 108 20.83%
syn61516871 CDSSequencingTemplate 23 30.77%
syn61000678 CDSSequencingTemplate 46 63.64%
syn39283850 Demographics 39 22.93%
syn39284405 Diagnosis 16 6.81%
syn39284881 Exposure 16 6.67%
syn39285152 FamilyHistory 16 25.00%
syn39285191 FollowUp 16 3.57%
syn51526303 HI-C-seqLevel1 66 100.00%
syn51702921 HI-C-seqLevel2 34 100.00%
syn58828438 HI-C-seqLevel3 2 60.00%
syn53335738 ImagingLevel1 16 75.00%
syn53339259 ImagingLevel2 71 77.78%
syn53335787 ImagingLevel3Segmentation 1598 75.00%
syn53408884 ImagingLevel4 70 71.43%
syn53711322 MassSpectrometryLevel1 494 90.32%
syn53711588 MassSpectrometryLevel1 214 96.77%
syn51703772 MassSpectrometryLevel1 479 100.00%
syn51732852 MassSpectrometryLevel3 28 100.00%
syn51732873 MassSpectrometryLevel4 28 100.00%
syn39283342 ScATAC-seqLevel1 640 74.03%
syn52177151 ScATAC-seqLevel2 17 33.61%
syn61064183 ScATAC-seqLevel3 80 13.64%
syn39283525 ScRNA-seqLevel1 384 78.98%
syn39285399 ScRNA-seqLevel2 128 91.57%
syn39285463 ScRNA-seqLevel3 192 83.33%
syn39285223 Therapy 16 9.52%

Metadata Validation

CDSSequencingTemplate is not yet supported by the Dashboard. Please notify Ethan to update the code!

Validation Passed.

Validation Passed.

Validation Passed.

Validation Passed.

HTA10_41_008 references parent ID=HTA10_41, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_203 references parent ID=HTA10_41, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_209 references parent ID=HTA10_41, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00801 references adjacent ID=HTA10_41_008_02, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00802 references adjacent ID=HTA10_41_008_01, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00802 references adjacent ID=HTA10_41_008_03, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00803 references adjacent ID=HTA10_41_008_02, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00803 references adjacent ID=HTA10_41_008_04, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00804 references adjacent ID=HTA10_41_008_03, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00804 references adjacent ID=HTA10_41_008_05, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00805 references adjacent ID=HTA10_41_008_04, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00805 references adjacent ID=HTA10_41_008_06, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00806 references adjacent ID=HTA10_41_008_05, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00806 references adjacent ID=HTA10_41_008_07, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00807 references adjacent ID=HTA10_41_008_06, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00807 references adjacent ID=HTA10_41_008_08, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00808 references adjacent ID=HTA10_41_008_07, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00808 references adjacent ID=HTA10_41_008_09, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00809 references adjacent ID=HTA10_41_008_08, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00809 references adjacent ID=HTA10_41_008_10, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00810 references adjacent ID=HTA10_41_008_09, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00810 references adjacent ID=HTA10_41_008_11, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00811 references adjacent ID=HTA10_41_008_10, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00811 references adjacent ID=HTA10_41_008_12, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00812 references adjacent ID=HTA10_41_008_11, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00812 references adjacent ID=HTA10_41_008_13, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00813 references adjacent ID=HTA10_41_008_12, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00813 references adjacent ID=HTA10_41_008_14, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00814 references adjacent ID=HTA10_41_008_13, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00814 references adjacent ID=HTA10_41_008_15, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00815 references adjacent ID=HTA10_41_008_14, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00815 references adjacent ID=HTA10_41_008_16, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00816 references adjacent ID=HTA10_41_008_15, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00816 references adjacent ID=HTA10_41_008_17, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00817 references adjacent ID=HTA10_41_008_16, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00817 references adjacent ID=HTA10_41_008_18, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00818 references adjacent ID=HTA10_41_008_17, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00818 references adjacent ID=HTA10_41_008_19, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00819 references adjacent ID=HTA10_41_008_18, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00819 references adjacent ID=HTA10_41_008_20, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00820 references adjacent ID=HTA10_41_008_19, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00820 references adjacent ID=HTA10_41_008_21, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00821 references adjacent ID=HTA10_41_008_20, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00821 references adjacent ID=HTA10_41_008_22, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00822 references adjacent ID=HTA10_41_008_21, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00822 references adjacent ID=HTA10_41_008_23, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00823 references adjacent ID=HTA10_41_008_22, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00823 references adjacent ID=HTA10_41_008_24, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00824 references adjacent ID=HTA10_41_008_23, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00824 references adjacent ID=HTA10_41_008_25, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00825 references adjacent ID=HTA10_41_008_24, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00825 references adjacent ID=HTA10_41_008_26, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00826 references adjacent ID=HTA10_41_008_25, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00826 references adjacent ID=HTA10_41_008_27, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00827 references adjacent ID=HTA10_41_008_26, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00827 references adjacent ID=HTA10_41_008_28, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00828 references adjacent ID=HTA10_41_008_27, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00828 references adjacent ID=HTA10_41_008_29, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00829 references adjacent ID=HTA10_41_008_28, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00829 references adjacent ID=HTA10_41_008_30, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00830 references adjacent ID=HTA10_41_008_29, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00830 references adjacent ID=HTA10_41_008_31, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00831 references adjacent ID=HTA10_41_008_30, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00831 references adjacent ID=HTA10_41_008_32, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].
HTA10_41_00832 references adjacent ID=HTA10_41_008_31, but no such ID exists. [Error occurred while processing file: syn66312808 of type Biospecimen].

Validation Passed.

In folder: codex_level_4/A001-C-002, file name: A001-C-002__(Reg2)_reg002_compensated.csv contains unsupported characters.
In folder: codex_level_4/A015-C-202, file name: A015-C-202_(Reg1)_reg001_compensated.csv contains unsupported characters.
In folder: codex_level_4/A001-C-023, file name: A001-C-023_(Reg1)_compensated.csv contains unsupported characters.
In folder: codex_level_4/A002-C-024, file name: A002-C-024_(Reg2)_reg002_compensated.csv contains unsupported characters.
In folder: codex_level_4/A001-C-124, file name: A001-C-124_(Reg1)_reg001_compensated.csv contains unsupported characters.
In folder: lipidomics/batch-1/mode-2, file name: F-NL-CEC_(F-Asc-001).mzML contains unsupported characters.
In folder: lipidomics/batch-1/mode-1, file name: F-NL-CEC_(F-Asc-001).mzML contains unsupported characters.
In folder: lipidomics/batch-1/mode-1, file name: F-NL-TR_(F-Trans-001).mzML contains unsupported characters.
In folder: lipidomics/batch-1/mode-2, file name: F-NL-TR_(F-Trans-001).mzML contains unsupported characters.
In folder: metabolomics/Batch 1/pHILIC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/pRPLC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nRPLC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nHILIC, file name: F-NL-CEC_(F-Asc-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nRPLC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/pRPLC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/nHILIC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: metabolomics/Batch 1/pHILIC, file name: F-NL-TR_(F-Trans-001).raw contains unsupported characters.
In folder: codex_level_4/A001-C-108, file name: Codex Analysis_A001-C-108.fcs contains unsupported characters.
In folder: codex_level_4/A001-C-104, file name: Codex Analysis_A001-C-104.fcs contains unsupported characters.

Folder Check

Root Path Num Annotated Files Num Unannotated Files

Clinical Data Matrix: Tiers 1 and 2





ParticipantID Demographics Exposure FamilyHistory FollowUp Diagnosis Therapy MolecularTest ClinicalDataTier2 SRRSClinicalDataTier2
HTA10_01 1 1 1 1 1 1 0 0 0
HTA10_02 1 1 1 1 1 1 0 0 0
HTA10_03 1 1 1 1 1 1 0 0 0
HTA10_04 1 1 1 1 1 1 0 0 0
HTA10_05 1 1 1 1 1 1 0 0 0
HTA10_06 1 1 1 1 1 1 0 0 0
HTA10_07 1 1 1 1 1 1 0 0 0
HTA10_08 1 1 1 1 1 1 0 0 0
HTA10_09 1 1 1 1 1 1 0 0 0
HTA10_10 1 1 1 1 1 1 0 0 0
HTA10_11 1 1 1 1 1 1 0 0 0
HTA10_12 1 1 1 1 1 1 0 0 0
HTA10_13 1 1 1 1 1 1 0 0 0
HTA10_15 1 0 0 0 0 0 0 0 0
HTA10_16 1 0 0 0 0 0 0 0 0
HTA10_17 1 0 0 0 0 0 0 0 0
HTA10_18 1 1 1 1 1 1 0 0 0
HTA10_19 1 0 0 0 0 0 0 0 0
HTA10_20 1 0 0 0 0 0 0 0 0
HTA10_21 1 0 0 0 0 0 0 0 0
HTA10_22 1 1 1 1 1 1 0 0 0
HTA10_23 1 0 0 0 0 0 0 0 0
HTA10_24 1 0 0 0 0 0 0 0 0
HTA10_25 1 0 0 0 0 0 0 0 0
HTA10_26 1 0 0 0 0 0 0 0 0
HTA10_27 1 0 0 0 0 0 0 0 0
HTA10_28 1 0 0 0 0 0 0 0 0
HTA10_29 1 0 0 0 0 0 0 0 0
HTA10_30 1 0 0 0 0 0 0 0 0
HTA10_31 1 0 0 0 0 0 0 0 0
HTA10_32 1 0 0 0 0 0 0 0 0
HTA10_33 1 0 0 0 0 0 0 0 0
HTA10_34 1 0 0 0 0 0 0 0 0
HTA10_35 1 0 0 0 0 0 0 0 0
HTA10_36 1 0 0 0 0 0 0 0 0
HTA10_37 1 0 0 0 0 0 0 0 0
HTA10_38 1 0 0 0 0 0 0 0 0
HTA10_39 1 0 0 0 0 0 0 0 0
HTA10_40 1 0 0 0 0 0 0 0 0
Counts
Demographics 39
Exposure 15
FamilyHistory 15
FollowUp 15
Diagnosis 15
Therapy 15
MolecularTest 0
ClinicalDataTier2 0
SRRSClinicalDataTier2 0

Clinical Data Matrix: Tier 3

No data available.

ParticipantID AcuteLym.. Neurobla.. BreastCa.. Colorect.. LungCanc.. Melanoma.. OvarianC.. Pancreat.. Prostate.. SarcomaT..
HTA10_01 0 0 0 0 0 0 0 0 0 0
HTA10_02 0 0 0 0 0 0 0 0 0 0
HTA10_03 0 0 0 0 0 0 0 0 0 0
HTA10_04 0 0 0 0 0 0 0 0 0 0
HTA10_05 0 0 0 0 0 0 0 0 0 0
HTA10_06 0 0 0 0 0 0 0 0 0 0
HTA10_07 0 0 0 0 0 0 0 0 0 0
HTA10_08 0 0 0 0 0 0 0 0 0 0
HTA10_09 0 0 0 0 0 0 0 0 0 0
HTA10_10 0 0 0 0 0 0 0 0 0 0
HTA10_11 0 0 0 0 0 0 0 0 0 0
HTA10_12 0 0 0 0 0 0 0 0 0 0
HTA10_13 0 0 0 0 0 0 0 0 0 0
HTA10_15 0 0 0 0 0 0 0 0 0 0
HTA10_16 0 0 0 0 0 0 0 0 0 0
HTA10_17 0 0 0 0 0 0 0 0 0 0
HTA10_18 0 0 0 0 0 0 0 0 0 0
HTA10_19 0 0 0 0 0 0 0 0 0 0
HTA10_20 0 0 0 0 0 0 0 0 0 0
HTA10_21 0 0 0 0 0 0 0 0 0 0
HTA10_22 0 0 0 0 0 0 0 0 0 0
HTA10_23 0 0 0 0 0 0 0 0 0 0
HTA10_24 0 0 0 0 0 0 0 0 0 0
HTA10_25 0 0 0 0 0 0 0 0 0 0
HTA10_26 0 0 0 0 0 0 0 0 0 0
HTA10_27 0 0 0 0 0 0 0 0 0 0
HTA10_28 0 0 0 0 0 0 0 0 0 0
HTA10_29 0 0 0 0 0 0 0 0 0 0
HTA10_30 0 0 0 0 0 0 0 0 0 0
HTA10_31 0 0 0 0 0 0 0 0 0 0
HTA10_32 0 0 0 0 0 0 0 0 0 0
HTA10_33 0 0 0 0 0 0 0 0 0 0
HTA10_34 0 0 0 0 0 0 0 0 0 0
HTA10_35 0 0 0 0 0 0 0 0 0 0
HTA10_36 0 0 0 0 0 0 0 0 0 0
HTA10_37 0 0 0 0 0 0 0 0 0 0
HTA10_38 0 0 0 0 0 0 0 0 0 0
HTA10_39 0 0 0 0 0 0 0 0 0 0
HTA10_40 0 0 0 0 0 0 0 0 0 0
Counts
AcuteLym.. 0
Neurobla.. 0
BreastCa.. 0
Colorect.. 0
LungCanc.. 0
Melanoma.. 0
OvarianC.. 0
Pancreat.. 0
Prostate.. 0
SarcomaT.. 0

Assay Matrix: Single Cell Data





BiospecimenID ScRNA-seqLevel1 ScRNA-seqLevel2 ScRNA-seqLevel3 ScRNA-seqLevel4 ScATAC-seqLevel1 ScATAC-seqLevel2 ScATAC-seqLevel3 ScATAC-seqLevel4
HTA10_01_002 0 0 0 0 1 0 1 0
HTA10_01_007 1 1 1 0 1 0 1 0
HTA10_01_014 1 1 1 0 1 1 1 0
HTA10_01_023 1 1 1 0 1 0 1 0
HTA10_01_104 1 1 1 0 1 0 1 0
HTA10_01_108 1 1 1 0 1 1 1 0
HTA10_01_119 1 1 1 0 1 0 1 0
HTA10_01_123 0 0 0 0 1 1 1 0
HTA10_01_124 1 1 1 0 1 0 1 0
HTA10_01_202 1 1 1 0 1 0 1 0
HTA10_01_203 1 1 1 0 1 0 1 0
HTA10_01_207 1 1 1 0 1 0 1 0
HTA10_01_218 0 0 0 0 1 0 1 0
HTA10_01_223 1 1 1 0 1 0 1 0
HTA10_02_010 1 1 1 0 1 1 1 0
HTA10_02_016 1 1 1 0 1 0 1 0
HTA10_02_021 1 1 1 0 1 0 1 0
HTA10_02_024 1 1 1 0 1 1 1 0
HTA10_02_025 0 0 0 0 1 0 1 0
HTA10_02_106 1 1 1 0 1 0 1 0
HTA10_02_114 1 1 1 0 1 0 1 0
HTA10_02_116 1 1 1 0 1 0 1 0
HTA10_02_121 1 1 1 0 1 1 1 0
HTA10_02_201 1 1 1 0 1 0 0 0
HTA10_02_202 0 0 0 0 1 1 1 0
HTA10_02_203 1 1 1 0 1 0 0 0
HTA10_02_204 1 1 1 0 1 0 1 0
HTA10_02_205 1 1 1 0 1 1 1 0
HTA10_02_212 1 1 1 0 1 0 1 0
HTA10_03_001 1 1 1 0 1 0 0 0
HTA10_03_002 0 0 0 0 1 0 1 0
HTA10_03_008 1 1 1 0 1 0 1 0
HTA10_03_013 0 0 0 0 1 0 1 0
HTA10_03_040 1 1 1 0 1 0 1 0
HTA10_03_043 1 1 1 0 1 0 0 0
HTA10_03_052 1 1 1 0 1 0 0 0
HTA10_03_054 1 1 1 0 1 0 0 0
HTA10_03_101 1 1 1 0 1 0 0 0
HTA10_03_108 1 1 1 0 1 0 0 0
HTA10_03_111 1 1 1 0 1 0 0 0
HTA10_03_114 1 1 1 0 1 0 0 0
HTA10_03_201 1 1 1 0 1 1 0 0
HTA10_04_001 1 1 1 0 1 0 1 0
HTA10_04_002 1 1 1 0 1 0 1 0
HTA10_04_005 1 1 1 0 1 0 1 0
HTA10_04_006 1 1 1 0 1 0 1 0
HTA10_04_008 1 1 1 0 1 0 1 0
HTA10_04_010 1 1 1 0 1 1 1 0
HTA10_04_102 0 0 0 0 1 0 1 0
HTA10_04_104 1 1 1 0 1 0 1 0
HTA10_04_106 1 1 1 0 1 0 1 0
HTA10_04_109 1 1 1 0 1 1 1 0
HTA10_04_202 1 1 1 0 1 0 1 0
HTA10_04_203 1 1 1 0 1 0 1 0
HTA10_04_204 1 1 1 0 1 0 1 0
HTA10_04_206 0 0 0 0 1 0 1 0
HTA10_04_208 1 1 1 0 1 0 1 0
HTA10_05_007 1 1 1 0 1 1 1 0
HTA10_05_034 1 1 1 0 1 1 1 0
HTA10_05_072 1 1 1 0 1 1 1 0
HTA10_05_091 1 1 1 0 1 1 1 0
HTA10_08_008 1 1 1 0 1 0 0 0
HTA10_08_015 1 1 1 0 1 0 0 0
HTA10_09_111 1 1 1 0 1 0 1 0
HTA10_10_018 1 1 1 0 1 1 0 0
HTA10_10_023 1 1 1 0 1 0 0 0
HTA10_11_112 1 1 1 0 1 0 1 0
HTA10_12_113 1 1 1 0 1 0 1 0
HTA10_13_114 0 0 0 0 1 0 1 0
HTA10_18_013 1 1 1 0 1 0 1 0
HTA10_18_020 1 1 1 0 1 0 1 0
HTA10_22_002 1 1 1 0 1 1 1 0
Counts
ScRNA-seqLevel1 62
ScRNA-seqLevel2 62
ScRNA-seqLevel3 62
ScRNA-seqLevel4 0
ScATAC-seqLevel1 72
ScATAC-seqLevel2 17
ScATAC-seqLevel3 57
ScATAC-seqLevel4 0

Assay Matrix: Bulk Data





BiospecimenID BulkRNA-seqLevel1 BulkRNA-seqLevel2 BulkRNA-seqLevel3 BulkRNA-seqLevel4 BulkWESLevel1 BulkWESLevel2 BulkWESLevel3 BulkWESLevel4 BulkMethylation-seqLevel1 BulkMethylation-seqLevel2 BulkMethylation-seqLevel3 BulkMethylation-seqLevel4 HI-C-seqLevel1 HI-C-seqLevel2 HI-C-seqLevel3 HI-C-seqLevel4
HTA10_01_004 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_01_005 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_01_007 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0
HTA10_01_008 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_01_011 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_01_013 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_01_019 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_01_021 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_01_023 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_01_024 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_01_102 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_107 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_113 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_01_122 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_124 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_206 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_01_210 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_214 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_219 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_222 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_01_900 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_02_001 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_02_002 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_02_006 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_02_010 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0
HTA10_02_012 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0
HTA10_02_013 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_02_016 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_019 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_020 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_021 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_022 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_023 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_024 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_025 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_102 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_103 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_107 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_111 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_02_116 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_02_121 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_02_122 1 0 1 0 1 1 0 0 0 0 0 0 1 1 1 0
HTA10_02_123 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_201 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_202 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_203 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_204 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_02_207 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_209 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_211 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_212 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0
HTA10_02_213 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_02_900 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_03_001 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_03_004 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_012 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_037 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_03_038 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0
HTA10_03_040 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_041 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_044 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_03_045 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_046 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_052 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_03_053 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_054 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_03_055 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_03_114 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_03_115 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_03_201 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_03_202 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_03_900 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_04_001 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_04_002 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_04_004 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_04_006 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_04_008 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_04_010 1 0 1 0 1 1 0 0 0 0 0 0 1 1 1 0
HTA10_04_102 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_04_109 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_04_203 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_04_206 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_04_900 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_05_002 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_004 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_006 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_007 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_05_008 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_009 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_011 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_020 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_025 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_026 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_027 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_031 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_032 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_034 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_05_037 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_038 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_039 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_040 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_046 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_053 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_056 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_057 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_061 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_063 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_065 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_072 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_073 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_074 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_076 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_080 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_084 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_088 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_05_092 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_095 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_098 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_101 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_102 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_104 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_05_105 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_106 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_05_107 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_108 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_117 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_118 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_05_900 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0
HTA10_06_002 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_003 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_004 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_005 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_006 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_009 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_013 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_014 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_024 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_025 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_031 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_032 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_034 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_038 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_039 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_043 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_044 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_045 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_049 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_051 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_055 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_061 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_062 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_063 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_064 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_065 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_069 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_073 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_079 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_104 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_105 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_108 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_109 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_110 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_124 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_126 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_06_900 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
HTA10_07_001 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_006 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_101 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_201 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_301 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_401 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_406 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_501 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_17_001 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_17_003 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_19_002 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_002 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_018 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_019 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_020 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_021 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_022 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_023 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_20_024 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_21_016 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_21_018 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_23_012 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_23_111 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_23_211 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_24_001 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_25_001 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_26_001 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_27_001 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
HTA10_28_001 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_29_001 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_30_001 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_31_001 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_32_001 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_33_001 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
HTA10_34_00402 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_34_00403 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_34_00802 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_34_00803 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_34_10302 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
HTA10_34_10303 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Counts
BulkRNA-seqLevel1 134
BulkRNA-seqLevel2 0
BulkRNA-seqLevel3 30
BulkRNA-seqLevel4 0
BulkWESLevel1 132
BulkWESLevel2 132
BulkWESLevel3 0
BulkWESLevel4 0
BulkMethylation-seqLevel1 51
BulkMethylation-seqLevel2 51
BulkMethylation-seqLevel3 0
BulkMethylation-seqLevel4 0
HI-C-seqLevel1 33
HI-C-seqLevel2 33
HI-C-seqLevel3 33
HI-C-seqLevel4 0

Assay Matrix: Core Imaging





BiospecimenID ImagingLevel1 ImagingLevel2 ImagingLevel3Image ImagingLevel3Channels ImagingLevel3Segmentation ImagingLevel4 SRRSImagingLevel2
HTA10_01_002 1 1 0 0 1 1 0
HTA10_01_007 1 1 0 0 1 1 0
HTA10_01_023 1 1 0 0 1 1 0
HTA10_01_104 0 1 0 0 1 1 0
HTA10_01_108 0 1 0 0 1 1 0
HTA10_01_119 1 1 0 0 1 1 0
HTA10_01_124 1 1 0 0 1 1 0
HTA10_01_207 0 1 0 0 1 1 0
HTA10_02_016 0 1 0 0 1 1 0
HTA10_02_021 0 1 0 0 1 1 0
HTA10_02_024 1 1 0 0 1 1 0
HTA10_02_025 0 1 0 0 1 1 0
HTA10_02_106 0 1 0 0 1 1 0
HTA10_02_203 1 1 0 0 1 1 0
HTA10_02_204 0 1 0 0 1 1 0
HTA10_02_205 1 1 0 0 1 1 0
HTA10_02_211 0 1 0 0 1 1 0
HTA10_02_212 0 1 0 0 1 1 0
HTA10_03_002 1 1 0 0 1 1 0
HTA10_03_114 0 1 0 0 1 1 0
HTA10_04_005 1 1 0 0 1 1 0
HTA10_04_010 0 1 0 0 1 1 0
HTA10_04_202 1 1 0 0 1 1 0
HTA10_04_204 0 1 0 0 1 1 0
HTA10_04_206 0 1 0 0 1 1 0
HTA10_04_207 0 1 0 0 1 1 0
HTA10_04_208 0 1 0 0 1 1 0
HTA10_05_072 1 1 0 0 1 1 0
HTA10_06_024 0 1 0 0 1 1 0
HTA10_06_025 0 1 0 0 1 1 0
HTA10_06_043 0 1 0 0 1 1 0
HTA10_06_044 0 1 0 0 1 1 0
HTA10_06_051 0 1 0 0 1 1 0
HTA10_06_055 0 1 0 0 1 1 0
HTA10_06_061 0 1 0 0 1 1 0
HTA10_06_062 0 1 0 0 1 1 0
HTA10_06_105 0 1 0 0 1 1 0
HTA10_07_101 1 1 0 0 1 1 0
HTA10_07_201 0 1 0 0 1 1 0
HTA10_07_301 1 1 0 0 1 1 0
HTA10_07_401 1 1 0 0 1 1 0
HTA10_11_112 1 1 0 0 1 1 0
HTA10_15_058 0 1 0 0 1 1 0
HTA10_15_059 0 1 0 0 1 1 0
HTA10_16_112 0 1 0 0 1 1 0
HTA10_16_113 0 1 0 0 1 1 0
HTA10_16_115 0 1 0 0 1 1 0
HTA10_16_116 0 1 0 0 1 1 0
HTA10_18_014 0 1 0 0 1 1 0
HTA10_18_021 0 1 0 0 1 1 0
HTA10_20_045 0 1 0 0 1 1 0
HTA10_23_212 0 1 0 0 1 1 0
HTA10_23_213 0 1 0 0 1 1 0
HTA10_29_001 0 1 0 0 1 1 0
HTA10_30_001 0 1 0 0 1 1 0
HTA10_33_001 0 1 0 0 1 1 0
HTA10_34_052 0 1 0 0 1 1 0
HTA10_35_008 0 1 0 0 1 1 0
HTA10_36_002 0 1 0 0 1 1 0
HTA10_37_005 0 1 0 0 1 1 0
HTA10_37_006 0 1 0 0 1 1 0
HTA10_38_004 0 1 0 0 1 1 0
HTA10_38_008 0 1 0 0 1 1 0
HTA10_38_404 0 1 0 0 1 1 0
HTA10_38_408 0 1 0 0 1 1 0
HTA10_38_504 0 1 0 0 1 1 0
HTA10_39_002 0 1 0 0 1 1 0
HTA10_40_101 0 1 0 0 1 1 0
Counts
ImagingLevel1 16
ImagingLevel2 68
ImagingLevel3Image 0
ImagingLevel3Channels 0
ImagingLevel3Segmentation 68
ImagingLevel4 68
SRRSImagingLevel2 0

Assay Matrix: Other





BiospecimenID 10xVisiumSpatialTranscriptomics-RNA-seqLevel1 10xVisiumSpatialTranscriptomics-RNA-seqLevel2 10xVisiumSpatialTranscriptomics-AuxiliaryFiles 10xVisiumSpatialTranscriptomics-RNA-seqLevel3 10xVisiumSpatialTranscriptomics-RNA-seqLevel4 Slide-seqLevel1 Slide-seqLevel2 Slide-seqLevel3 ElectronMicroscopyLevel1 ElectronMicroscopyLevel2 ElectronMicroscopyLevel3 ElectronMicroscopyLevel4 MassSpectrometryLevel1 MassSpectrometryLevel2 MassSpectrometryLevel3 MassSpectrometryLevel4 MassSpectrometryAuxiliaryFile RPPALevel1 RPPALevel2 RPPALevel3 RPPALevel4 OtherAssay ExSeqMinimal AccessoryManifest
HTA10_01_004 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_005 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_007 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_01_021 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_102 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_107 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_122 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_124 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_210 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_214 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_219 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_01_222 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_010 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_016 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_019 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_021 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_023 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_024 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_025 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_103 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_107 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_116 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_121 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_122 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_123 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_201 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_202 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_203 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_204 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_207 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_209 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_211 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_212 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_02_213 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_03_001 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_03_052 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_03_055 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_03_114 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_03_201 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_001 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_002 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_008 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_010 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_102 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_109 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_04_206 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_002 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_004 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_007 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_008 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_009 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_05_025 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_027 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_037 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_038 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_039 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_040 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_046 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_053 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_061 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_063 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_065 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_072 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_073 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_074 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_076 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_088 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_092 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_095 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_098 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_103 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_104 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_105 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_05_106 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_06_002 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_004 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_005 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_024 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_025 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_032 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_043 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_044 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_045 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_049 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_051 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_055 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_061 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_062 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_065 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_105 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_107 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_06_110 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_07_001 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_07_006 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_07_101 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_07_201 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0
HTA10_07_301 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_401 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_406 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_07_501 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
HTA10_EXT0_000 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
Counts
10xVisiumSpatialTranscriptomics-RNA-seqLevel1 0
10xVisiumSpatialTranscriptomics-RNA-seqLevel2 0
10xVisiumSpatialTranscriptomics-AuxiliaryFiles 0
10xVisiumSpatialTranscriptomics-RNA-seqLevel3 0
10xVisiumSpatialTranscriptomics-RNA-seqLevel4 0
Slide-seqLevel1 0
Slide-seqLevel2 0
Slide-seqLevel3 0
ElectronMicroscopyLevel1 0
ElectronMicroscopyLevel2 0
ElectronMicroscopyLevel3 0
ElectronMicroscopyLevel4 0
MassSpectrometryLevel1 101
MassSpectrometryLevel2 0
MassSpectrometryLevel3 93
MassSpectrometryLevel4 93
MassSpectrometryAuxiliaryFile 0
RPPALevel1 0
RPPALevel2 0
RPPALevel3 0
RPPALevel4 0
OtherAssay 0
ExSeqMinimal 0
AccessoryManifest 0

gantt dateFormat X axisFormat %s section HTA10_01 Ascending colon Surgical Resection (10):milestone,0,0 section HTA10_01 Blood Blood draw:milestone,0,0 section HTA10_01 Descending colon Surgical Resection (12):milestone,0,0 section HTA10_01 Transverse colon Surgical Resection (9):milestone,0,0 section HTA10_02 Ascending colon Surgical Resection (10):milestone,0,0 section HTA10_02 Blood Blood draw:milestone,0,0 section HTA10_02 Descending colon Surgical Resection (14):milestone,0,0 section HTA10_02 Transverse colon Surgical Resection (10):milestone,0,0 section HTA10_03 Ascending colon Surgical Resection (2):milestone,0,0 section HTA10_03 Blood Blood draw:milestone,0,0 section HTA10_03 Descending colon Surgical Resection (12):milestone,0,0 section HTA10_03 Rectum NOS Surgical Resection (6):milestone,0,0 section HTA10_03 Transverse colon Surgical Resection (5):milestone,0,0 section HTA10_04 Ascending colon Surgical Resection (6):milestone,0,0 section HTA10_04 Blood Blood draw (2):milestone,0,0 section HTA10_04 Descending colon Surgical Resection (2):milestone,0,0 section HTA10_04 Rectum NOS Surgical Resection (5):milestone,0,0 section HTA10_04 Transverse colon Surgical Resection (4):milestone,0,0 section HTA10_05 Ascending colon Surgical Resection (9):milestone,0,0 section HTA10_05 Blood Blood draw:milestone,0,0 section HTA10_05 Colon NOS Surgical Resection:milestone,0,0 section HTA10_05 Descending colon Surgical Resection (10):milestone,0,0 section HTA10_05 Rectum NOS Surgical Resection (12):milestone,0,0 section HTA10_05 Transverse colon Surgical Resection (13):milestone,0,0 section HTA10_06 Ascending colon Surgical Resection (10):milestone,0,0 section HTA10_06 Ascending colon Surgical Resection:milestone,1545,1545 section HTA10_06 Blood Blood draw:milestone,0,0 section HTA10_06 Colon NOS Surgical Resection (2):milestone,0,0 section HTA10_06 Colon NOS Surgical Resection:milestone,1545,1545 section HTA10_06 Descending colon Surgical Resection (13):milestone,0,0 section HTA10_06 Sigmoid colon Surgical Resection:milestone,0,0 section HTA10_06 Transverse colon Surgical Resection (12):milestone,0,0 section HTA10_07 Ascending colon Surgical Resection:milestone,0,0 section HTA10_07 Descending colon Surgical Resection:milestone,0,0 section HTA10_07 Duodenum Surgical Resection:milestone,0,0 section HTA10_07 Ileum Surgical Resection:milestone,0,0 section HTA10_07 Jejunum Surgical Resection (2):milestone,0,0 section HTA10_07 Sigmoid colon Surgical Resection:milestone,0,0 section HTA10_07 Transverse colon Surgical Resection:milestone,0,0 section HTA10_08 Ascending colon Excision:milestone,0,0 section HTA10_08 Descending colon Excision:milestone,0,0 section HTA10_09 Rectum NOS Surgical Resection:milestone,0,0 section HTA10_10 Ascending colon Excision (2):milestone,0,0 section HTA10_11 Rectum NOS Surgical Resection:milestone,0,0 section HTA10_12 Rectum NOS Surgical Resection:milestone,0,0 section HTA10_13 Rectum NOS Surgical Resection:milestone,0,0 section HTA10_15 Descending colon Surgical Resection (2):milestone,0,0 section HTA10_16 Transverse colon Surgical Resection (4):milestone,0,0 section HTA10_17 Sigmoid colon Excision (2):milestone,0,0 section HTA10_18 Ascending colon Excision:milestone,0,0 section HTA10_18 Ascending colon Excision:milestone,5,5 section HTA10_18 Transverse colon Excision:milestone,0,0 section HTA10_18 Transverse colon Excision:milestone,5,5 section HTA10_19 Rectum NOS Excision:milestone,0,0 section HTA10_20 Ascending colon Excision (2):milestone,0,0 section HTA10_20 Cecum Excision:milestone,0,0 section HTA10_20 Descending colon Excision:milestone,0,0 section HTA10_20 Sigmoid colon Excision (4):milestone,0,0 section HTA10_20 Sigmoid colon Excision:milestone,245,245 section HTA10_21 Rectum NOS Excision:milestone,0,0 section HTA10_21 Sigmoid colon Excision:milestone,0,0 section HTA10_22 Ascending colon Excision:milestone,0,0 section HTA10_23 Ascending colon Surgical Resection (3):milestone,0,0 section HTA10_23 Descending colon Surgical Resection:milestone,0,0 section HTA10_23 Transverse colon Surgical Resection:milestone,0,0 section HTA10_24 Colon NOS Surgical Resection:milestone,0,0 section HTA10_25 Liver Surgical Resection:milestone,0,0 section HTA10_26 Ovary Surgical Resection:milestone,0,0 section HTA10_27 Sigmoid colon Surgical Resection:milestone,0,0 section HTA10_28 Colon NOS Surgical Resection:milestone,0,0 section HTA10_29 Cecum Surgical Resection:milestone,0,0 section HTA10_30 Transverse colon Surgical Resection:milestone,0,0 section HTA10_31 Cecum Surgical Resection:milestone,0,0 section HTA10_32 Cecum Surgical Resection:milestone,0,0 section HTA10_33 Sigmoid colon Surgical Resection:milestone,0,0 section HTA10_34 Descending colon Surgical Resection:milestone,0,0 section HTA10_34 Descending colon Surgical Resection (2):milestone,1,1 section HTA10_34 Transverse colon Surgical Resection:milestone,0,0 section HTA10_35 Descending colon Excision:milestone,0,0 section HTA10_36 Duodenum Excision:milestone,0,0 section HTA10_37 Descending colon Surgical Resection (2):milestone,0,0 section HTA10_38 Descending colon Surgical Resection (2):milestone,0,0 section HTA10_38 Duodenum Surgical Resection:milestone,0,0 section HTA10_38 Jejunum Surgical Resection (2):milestone,0,0 section HTA10_39 Descending colon Surgical Resection:milestone,0,0 section HTA10_40 Transverse colon Surgical Resection:milestone,0,0 section HTA10_41 Ascending colon Excision (2):milestone,0,0 section HTA10_41 Descending colon Excision:milestone,0,0 section HTA10_EXT0 unknown Other Acquisition Method:milestone,0,0

DCC Debugging


Auto-generated via the HTAN Data Coordinating Center (DCC).