HTAN Dashboard Auto-generated by the HTAN Data Coordinating Center (DCC)

HTA15: TNP SRRS

Total File Size
1.1 TB

Total size of all files submitted to the DCC.

Total Number of Files
337

Total number of files submitted to the DCC.

Validation Errors
7

Total number of validation errors detected by the DCC dashboard.

Percent Metadata Complete
63.8%

Total percent of metadata fields completed.

This tab provides a complete list of all metadata files submitted by the atlas.
Synapse ID Category Num Records Percent Complete Metadata
syn52590408 Biospecimen 38 26.58%
syn51607146 SRRSBiospecimen 180 68.93%
syn51757910 SRRSBiospecimen 6 49.55%
syn52799092 SRRSBiospecimen 150 52.25%
syn51607133 SRRSClinicalDataTier2 6 60.85%
syn51757887 SRRSClinicalDataTier2 4 55.81%
syn52799106 SRRSClinicalDataTier2 8 73.55%
syn50295784 SRRSImagingLevel2 6 87.88%
syn51907277 SRRSImagingLevel2 72 65.12%
syn52702413 SRRSImagingLevel2 65 88.24%
syn52751109 ScATAC-seqLevel1 56 66.82%
syn52588608 ScRNA-seqLevel1 63 83.31%
This tab provides a complete list of all validation errors detected by the dashboard.

Validation Passed.

Validation Passed.

Cannot assess. No Demographics File.

Validation Passed.

Validation Passed.

HTA15_12342_1203 references parent ID=HTA15_12342_1201, but no such ID exists. [Error occurred while processing file: syn52590408 of type Biospecimen].
HTA15_12254_1203 references parent ID=HTA15_12254_1201, but no such ID exists. [Error occurred while processing file: syn52590408 of type Biospecimen].
HTA15_100005_007 references parent ID=HTA15_100005, but no such ID exists. [Error occurred while processing file: syn52590408 of type Biospecimen].

Validation Passed.

In folder: WashUniv_imaging_level_2, file name: HT112CRL T1 A1-A5 23.svs contains unsupported characters.
In folder: WashUniv_imaging_level_2, file name: HT112CRC T2 A1-A5 33.svs contains unsupported characters.
In folder: WashUniv_imaging_level_2, file name: HT112CRC T3 A1-A5.svs contains unsupported characters.
These plots are designed to visually summarize the data completeness of an HTAN atlas.

For example:

  • how much Tier 1 clinical data has the atlas provided?
  • for sequencing or imaging data, has the atlas provided Level 1-4 data?

Assay Matrix: Single Cell Data





BiospecimenID ScRNA-seqLevel1 ScRNA-seqLevel2 ScRNA-seqLevel3 ScRNA-seqLevel4 ScATAC-seqLevel1 ScATAC-seqLevel2 ScATAC-seqLevel3 ScATAC-seqLevel4
HTA15_12254_1203 0 0 0 0 1 0 0 0
HTA15_12254_1206 1 0 0 0 0 0 0 0
HTA15_12342_1203 0 0 0 0 1 0 0 0
HTA15_12342_1206 1 0 0 0 0 0 0 0
HTA15_51430_1503 0 0 0 0 1 0 0 0
HTA15_51430_1506 1 0 0 0 0 0 0 0
HTA15_51430_1513 1 0 0 0 0 0 0 0
HTA15_51430_1514 0 0 0 0 1 0 0 0
HTA15_51703_1503 0 0 0 0 1 0 0 0
HTA15_51703_1506 1 0 0 0 0 0 0 0
HTA15_51703_1603 1 0 0 0 0 0 0 0
HTA15_51703_1604 0 0 0 0 1 0 0 0
HTA15_100004_114001 1 0 0 0 1 0 0 0
HTA15_100005_007001 1 0 0 0 1 0 0 0
Counts
ScRNA-seqLevel1 8
ScRNA-seqLevel2 0
ScRNA-seqLevel3 0
ScRNA-seqLevel4 0
ScATAC-seqLevel1 8
ScATAC-seqLevel2 0
ScATAC-seqLevel3 0
ScATAC-seqLevel4 0

Assay Matrix: Core Imaging





BiospecimenID ImagingLevel1 ImagingLevel2 ImagingLevel3Image ImagingLevel3Channels ImagingLevel3Segmentation ImagingLevel4 SRRSImagingLevel2
HTA15_30001_7000027 0 0 0 0 0 0 1
HTA15_30001_7000028 0 0 0 0 0 0 1
HTA15_30001_7000029 0 0 0 0 0 0 1
HTA15_30001_7000030 0 0 0 0 0 0 1
HTA15_30001_7000031 0 0 0 0 0 0 1
HTA15_30001_7000032 0 0 0 0 0 0 1
HTA15_30001_7000033 0 0 0 0 0 0 1
HTA15_30001_7000034 0 0 0 0 0 0 1
HTA15_30001_7000035 0 0 0 0 0 0 1
HTA15_30001_7000036 0 0 0 0 0 0 1
HTA15_30001_7000037 0 0 0 0 0 0 1
HTA15_30001_7000038 0 0 0 0 0 0 1
HTA15_30001_7000039 0 0 0 0 0 0 1
HTA15_30001_7100040 0 0 0 0 0 0 1
HTA15_30001_7100041 0 0 0 0 0 0 1
HTA15_30001_7100042 0 0 0 0 0 0 1
HTA15_30001_7100043 0 0 0 0 0 0 1
HTA15_30001_7100044 0 0 0 0 0 0 1
HTA15_30001_7100045 0 0 0 0 0 0 1
HTA15_30001_7100046 0 0 0 0 0 0 1
HTA15_30001_7100047 0 0 0 0 0 0 1
HTA15_30002_7000035 0 0 0 0 0 0 1
HTA15_30002_7000036 0 0 0 0 0 0 1
HTA15_30002_7000037 0 0 0 0 0 0 1
HTA15_30002_7000038 0 0 0 0 0 0 1
HTA15_30002_7000039 0 0 0 0 0 0 1
HTA15_30002_7000040 0 0 0 0 0 0 1
HTA15_30002_7000041 0 0 0 0 0 0 1
HTA15_30002_7000042 0 0 0 0 0 0 1
HTA15_30002_7100043 0 0 0 0 0 0 1
HTA15_30002_7100044 0 0 0 0 0 0 1
HTA15_30002_7100045 0 0 0 0 0 0 1
HTA15_30002_7100046 0 0 0 0 0 0 1
HTA15_30005_7000031 0 0 0 0 0 0 1
HTA15_30005_7000032 0 0 0 0 0 0 1
HTA15_30005_7000033 0 0 0 0 0 0 1
HTA15_30005_7000034 0 0 0 0 0 0 1
HTA15_30005_7000035 0 0 0 0 0 0 1
HTA15_30005_7000036 0 0 0 0 0 0 1
HTA15_30005_7000037 0 0 0 0 0 0 1
HTA15_30005_7000038 0 0 0 0 0 0 1
HTA15_30005_7000039 0 0 0 0 0 0 1
HTA15_30005_7000040 0 0 0 0 0 0 1
HTA15_30005_7100041 0 0 0 0 0 0 1
HTA15_30005_7100042 0 0 0 0 0 0 1
HTA15_30005_7100043 0 0 0 0 0 0 1
HTA15_30005_7100044 0 0 0 0 0 0 1
HTA15_30005_7100045 0 0 0 0 0 0 1
HTA15_30005_7100046 0 0 0 0 0 0 1
HTA15_30005_7100047 0 0 0 0 0 0 1
HTA15_30005_7100048 0 0 0 0 0 0 1
HTA15_30005_7100049 0 0 0 0 0 0 1
HTA15_30005_7100050 0 0 0 0 0 0 1
HTA15_30007_7000017 0 0 0 0 0 0 1
HTA15_30007_7000018 0 0 0 0 0 0 1
HTA15_30007_7000019 0 0 0 0 0 0 1
HTA15_30007_7000021 0 0 0 0 0 0 1
HTA15_30007_7000023 0 0 0 0 0 0 1
HTA15_30007_7000025 0 0 0 0 0 0 1
HTA15_30007_7100027 0 0 0 0 0 0 1
HTA15_30007_7100028 0 0 0 0 0 0 1
HTA15_30007_7100029 0 0 0 0 0 0 1
HTA15_30007_7100030 0 0 0 0 0 0 1
HTA15_30007_7100031 0 0 0 0 0 0 1
HTA15_30007_7100032 0 0 0 0 0 0 1
HTA15_51430_1131 0 0 0 0 0 0 1
HTA15_51430_1141 0 0 0 0 0 0 1
HTA15_51430_1151 0 0 0 0 0 0 1
HTA15_51430_1161 0 0 0 0 0 0 1
HTA15_51430_1171 0 0 0 0 0 0 1
HTA15_51430_1181 0 0 0 0 0 0 1
HTA15_51430_1191 0 0 0 0 0 0 1
HTA15_51430_1201 0 0 0 0 0 0 1
HTA15_51430_1301 0 0 0 0 0 0 1
HTA15_51477_1211 0 0 0 0 0 0 1
HTA15_51477_1221 0 0 0 0 0 0 1
HTA15_51477_1231 0 0 0 0 0 0 1
HTA15_51477_1241 0 0 0 0 0 0 1
HTA15_51477_1271 0 0 0 0 0 0 1
HTA15_51477_1281 0 0 0 0 0 0 1
HTA15_51477_1291 0 0 0 0 0 0 1
HTA15_51477_1301 0 0 0 0 0 0 1
HTA15_51477_1311 0 0 0 0 0 0 1
HTA15_51477_1321 0 0 0 0 0 0 1
HTA15_51484_1341 0 0 0 0 0 0 1
HTA15_51484_1342 0 0 0 0 0 0 1
HTA15_51484_1343 0 0 0 0 0 0 1
HTA15_51484_1344 0 0 0 0 0 0 1
HTA15_51484_1351 0 0 0 0 0 0 1
HTA15_51484_1352 0 0 0 0 0 0 1
HTA15_51484_1353 0 0 0 0 0 0 1
HTA15_51484_1361 0 0 0 0 0 0 1
HTA15_51484_1371 0 0 0 0 0 0 1
HTA15_51484_1381 0 0 0 0 0 0 1
HTA15_51484_1391 0 0 0 0 0 0 1
HTA15_51484_1401 0 0 0 0 0 0 1
HTA15_51484_1701 0 0 0 0 0 0 1
HTA15_51703_1201 0 0 0 0 0 0 1
HTA15_51703_1301 0 0 0 0 0 0 1
HTA15_51716_1211 0 0 0 0 0 0 1
HTA15_51716_1221 0 0 0 0 0 0 1
HTA15_51716_1231 0 0 0 0 0 0 1
HTA15_51716_1241 0 0 0 0 0 0 1
HTA15_51716_1251 0 0 0 0 0 0 1
HTA15_51716_1261 0 0 0 0 0 0 1
HTA15_51716_1271 0 0 0 0 0 0 1
HTA15_51716_1281 0 0 0 0 0 0 1
HTA15_51716_1291 0 0 0 0 0 0 1
HTA15_51716_1301 0 0 0 0 0 0 1
HTA15_51716_1311 0 0 0 0 0 0 1
HTA15_51716_1321 0 0 0 0 0 0 1
HTA15_51748_1311 0 0 0 0 0 0 1
HTA15_51748_1312 0 0 0 0 0 0 1
HTA15_51748_1321 0 0 0 0 0 0 1
HTA15_51748_1322 0 0 0 0 0 0 1
HTA15_51748_1331 0 0 0 0 0 0 1
HTA15_51748_1332 0 0 0 0 0 0 1
HTA15_51748_1341 0 0 0 0 0 0 1
HTA15_51748_1351 0 0 0 0 0 0 1
HTA15_51748_1361 0 0 0 0 0 0 1
HTA15_51748_1362 0 0 0 0 0 0 1
HTA15_51748_1401 0 0 0 0 0 0 1
HTA15_51833_1111 0 0 0 0 0 0 1
HTA15_51833_1141 0 0 0 0 0 0 1
HTA15_51833_1701 0 0 0 0 0 0 1
HTA15_51883_1101 0 0 0 0 0 0 1
HTA15_51883_1111 0 0 0 0 0 0 1
HTA15_51883_1121 0 0 0 0 0 0 1
HTA15_51883_1191 0 0 0 0 0 0 1
HTA15_51883_1201 0 0 0 0 0 0 1
HTA15_51883_1211 0 0 0 0 0 0 1
HTA15_51883_1221 0 0 0 0 0 0 1
HTA15_51883_1231 0 0 0 0 0 0 1
HTA15_51883_1241 0 0 0 0 0 0 1
HTA15_51883_1701 0 0 0 0 0 0 1
HTA15_51883_1801 0 0 0 0 0 0 1
HTA15_51883_1901 0 0 0 0 0 0 1
HTA15_100001_032 0 0 0 0 0 0 1
HTA15_100001_034 0 0 0 0 0 0 1
HTA15_100002_033 0 0 0 0 0 0 1
HTA15_100002_091 0 0 0 0 0 0 1
HTA15_100003_101 0 0 0 0 0 0 1
HTA15_100004_208 0 0 0 0 0 0 1
Counts
ImagingLevel1 0
ImagingLevel2 0
ImagingLevel3Image 0
ImagingLevel3Channels 0
ImagingLevel3Segmentation 0
ImagingLevel4 0
SRRSImagingLevel2 143

gantt dateFormat X axisFormat %s section HTA15_100004 Transverse colon Surgical Resection:milestone,0,0 section HTA15_100005 Descending colon Surgical Resection:milestone,0,0 section HTA15_51430 Lymph nodes of axilla or arm Right Surgical Resection:milestone,0,0 section HTA15_51703 skin of lower limb and hip Right Excision:milestone,0,0

This tab is for HTAN DCC debugging purposes only. It reviews all paths in the atlas, and summarizes:
  • the number of files annotated via an existing metadata file.
  • the number of files upload to the cloud, but not yet annotated with any metadata.
Root Path Num Annotated Files Num Unannotated Files
BU_imaging_level_2_clean 65 0
DFCI_imaging_level_2 72 0
SNUC_TNP_snATACseq_Level_1 56 15
SNUC_TNP_snRNAseq_Level_1 64 24
Stanford_imaging_level_2 6 0
WashUniv_imaging_level_2 3 15
WashUniv_imaging_level_2_clean 0 17
This tab is for HTAN DCC debugging purposes only. Atlases should please ignore.

@ HTAN Data Coordinating Center (DCC).