This tab provides a complete list of all metadata files submitted by the atlas.

Synapse ID	Category	Num Records	Percent Complete Metadata
syn53274250	Biospecimen	207	16.95%
syn53277789	Biospecimen	91	16.95%
syn39247437	Biospecimen	34	17.31%
syn53132005	BulkWESLevel1	310	46.67%
syn53462044	BulkWESLevel1	312	46.67%
syn53462156	BulkWESLevel2	98	18.75%
syn53283206	BulkWESLevel3	171	58.82%
syn53462167	BulkWESLevel3	15	47.06%
syn53277447	Demographics	16	6.25%
syn53284493	Demographics	23	36.41%
syn39247346	Demographics	30	12.50%
syn39247066	Diagnosis	30	5.78%
syn53486559	Diagnosis	23	5.61%
syn39247085	Exposure	30	3.45%
syn39247103	FamilyHistory	30	14.29%
syn39247123	FollowUp	30	2.06%
syn64154305	ImagingLevel2	4	66.67%
syn53210837	ImagingLevel2	10	68.89%
syn64154495	ImagingLevel3Segmentation	4	75.00%
syn53192032	ImagingLevel3Segmentation	11	75.00%
syn53254370	ImagingLevel4	1	71.43%
syn53192064	ImagingLevel4	11	71.43%
syn64154674	ImagingLevel4	1	71.43%
syn39247186	MolecularTest	30	11.54%
syn53284698	NeuroblastomaandGliomaTier3	47	20.00%
syn53275954	NeuroblastomaandGliomaTier3	33	20.00%
syn53192024	ScATAC-seqLevel1	222	80.65%
syn51181549	ScATAC-seqLevel1	240	90.62%
syn51789623	ScATAC-seqLevel1	647	87.50%
syn53192021	ScATAC-seqLevel2	132	36.67%
syn52368570	ScATAC-seqLevel2	84	37.10%
syn53192027	ScATAC-seqLevel3	102	11.63%
syn51791727	ScATAC-seqLevel3	42	13.64%
syn51425726	ScATAC-seqLevel4	9	100.00%
syn53253226	ScATAC-seqLevel4	2	100.00%
syn53398038	ScATAC-seqLevel4	3	100.00%
syn39246524	ScRNA-seqLevel1	204	67.50%
syn52346908	ScRNA-seqLevel1	858	68.42%
syn53132015	ScRNA-seqLevel1	376	67.57%
syn52346918	ScRNA-seqLevel2	91	94.74%
syn39247218	ScRNA-seqLevel2	45	100.00%
syn53134687	ScRNA-seqLevel2	138	88.89%
syn52346923	ScRNA-seqLevel3	273	93.75%
syn53216875	ScRNA-seqLevel3	210	93.33%
syn39247252	ScRNA-seqLevel3	135	82.35%
syn51425823	ScRNA-seqLevel4	10	100.00%
syn53254166	ScRNA-seqLevel4	3	100.00%
syn52346928	ScRNA-seqLevel4	191	99.84%
syn39247148	Therapy	30	22.50%

This tab provides a complete list of all validation errors detected by the dashboard.

Validation Passed.

HTA4_2005_36724 references parent ID=HTA4_2005_26707, but no such ID exists. [Error occurred while processing file: syn53216875 of type ScRNA-seqLevel3].
HTA4_2005_36727 references parent ID=HTA4_2005_26707, but no such ID exists. [Error occurred while processing file: syn53216875 of type ScRNA-seqLevel3].
HTA4_2005_36728 references parent ID=HTA4_2005_26707, but no such ID exists. [Error occurred while processing file: syn53216875 of type ScRNA-seqLevel3].
HTA4_2005_36729 references parent ID=HTA4_2005_26707, but no such ID exists. [Error occurred while processing file: syn53216875 of type ScRNA-seqLevel3].

Validation Passed.

In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYKGI_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYLNH_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYSBA_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYUZJ_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYUZM_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYWJZ_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYWKL_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYYBG_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYYNY_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYZLC_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYZVY_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAYZWN_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAZBGV_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAZBLA_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAZBSZ_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAZFPH_scRNA.bam contains unsupported characters.
In folder: single_cell_RNAseq_level_2, file name: MLL_ PAZGKI_scRNA.bam contains unsupported characters.

These plots are designed to visually summarize the data completeness of an HTAN atlas.

For example:

how much Tier 1 clinical data has the atlas provided?
for sequencing or imaging data, has the atlas provided Level 1-4 data?

Clinical Data Matrix: Tiers 1 and 2

ParticipantID	Demographics	Exposure	FamilyHistory	FollowUp	Diagnosis	Therapy	MolecularTest
HTA4_1	1	1	1	1	1	1	1
HTA4_2	1	1	1	1	1	1	1
HTA4_3	1	1	1	1	1	1	1
HTA4_4	1	1	1	1	1	1	1
HTA4_5	1	1	1	1	1	1	1
HTA4_6	1	1	1	1	1	1	1
HTA4_7	1	1	1	1	1	1	1
HTA4_8	1	1	1	1	1	1	1
HTA4_9	1	1	1	1	1	1	1
HTA4_10	1	1	1	1	1	1	1
HTA4_11	1	1	1	1	1	1	1
HTA4_12	1	1	1	1	1	1	1
HTA4_13	1	1	1	1	1	1	1
HTA4_14	1	1	1	1	1	1	1
HTA4_15	1	1	1	1	1	1	1
HTA4_16	1	1	1	1	1	1	1
HTA4_17	1	1	1	1	1	1	1
HTA4_18	1	1	1	1	1	1	1
HTA4_19	1	1	1	1	1	1	1
HTA4_20	1	1	1	1	1	1	1
HTA4_21	1	1	1	1	1	1	1
HTA4_22	1	1	1	1	1	1	1
HTA4_23	1	1	1	1	1	1	1
HTA4_24	1	1	1	1	1	1	1
HTA4_25	1	1	1	1	1	1	1
HTA4_26	1	1	1	1	1	1	1
HTA4_27	1	1	1	1	1	1	1
HTA4_28	1	1	1	1	1	1	1
HTA4_29	1	1	1	1	1	1	1
HTA4_30	1	1	1	1	1	1	1
HTA4_1001	1	0	0	0	1	0	0
HTA4_1002	1	0	0	0	1	0	0
HTA4_1003	1	0	0	0	1	0	0
HTA4_1004	1	0	0	0	1	0	0
HTA4_1005	1	0	0	0	1	0	0
HTA4_1006	1	0	0	0	1	0	0
HTA4_1007	1	0	0	0	1	0	0
HTA4_1008	1	0	0	0	1	0	0
HTA4_1009	1	0	0	0	1	0	0
HTA4_1010	1	0	0	0	1	0	0
HTA4_1011	1	0	0	0	1	0	0
HTA4_1012	1	0	0	0	1	0	0
HTA4_1013	1	0	0	0	1	0	0
HTA4_1014	1	0	0	0	1	0	0
HTA4_1015	1	0	0	0	1	0	0
HTA4_1016	1	0	0	0	1	0	0
HTA4_1017	1	0	0	0	1	0	0
HTA4_1018	1	0	0	0	1	0	0
HTA4_1019	1	0	0	0	1	0	0
HTA4_1020	1	0	0	0	1	0	0
HTA4_1021	1	0	0	0	1	0	0
HTA4_1022	1	0	0	0	1	0	0
HTA4_1023	1	0	0	0	1	0	0
HTA4_2001	1	0	0	0	0	0	0
HTA4_2002	1	0	0	0	0	0	0
HTA4_2003	1	0	0	0	0	0	0
HTA4_2004	1	0	0	0	0	0	0
HTA4_2005	1	0	0	0	0	0	0
HTA4_2006	1	0	0	0	0	0	0
HTA4_2007	1	0	0	0	0	0	0
HTA4_2008	1	0	0	0	0	0	0
HTA4_2009	1	0	0	0	0	0	0
HTA4_2010	1	0	0	0	0	0	0
HTA4_2011	1	0	0	0	0	0	0
HTA4_2012	1	0	0	0	0	0	0
HTA4_2013	1	0	0	0	0	0	0
HTA4_2014	1	0	0	0	0	0	0
HTA4_2015	1	0	0	0	0	0	0
HTA4_2016	1	0	0	0	0	0	0

	Counts
Demographics	69
Exposure	30
FamilyHistory	30
FollowUp	30
Diagnosis	53
Therapy	30
MolecularTest	30
ClinicalDataTier2	0
SRRSClinicalDataTier2	0

Clinical Data Matrix: Tier 3

ParticipantID	AcuteLym..	Neurobla..	BreastCa..	Colorect..	LungCanc..	Melanoma..	OvarianC..	Pancreat..	Prostate..	SarcomaT..
HTA4_1	0	0	0	0	0	0	0	0	0	0
HTA4_2	0	0	0	0	0	0	0	0	0	0
HTA4_3	0	0	0	0	0	0	0	0	0	0
HTA4_4	0	0	0	0	0	0	0	0	0	0
HTA4_5	0	0	0	0	0	0	0	0	0	0
HTA4_6	0	0	0	0	0	0	0	0	0	0
HTA4_7	0	0	0	0	0	0	0	0	0	0
HTA4_8	0	0	0	0	0	0	0	0	0	0
HTA4_9	0	0	0	0	0	0	0	0	0	0
HTA4_10	0	0	0	0	0	0	0	0	0	0
HTA4_11	0	0	0	0	0	0	0	0	0	0
HTA4_12	0	0	0	0	0	0	0	0	0	0
HTA4_13	0	0	0	0	0	0	0	0	0	0
HTA4_14	0	0	0	0	0	0	0	0	0	0
HTA4_15	0	0	0	0	0	0	0	0	0	0
HTA4_16	0	0	0	0	0	0	0	0	0	0
HTA4_17	0	0	0	0	0	0	0	0	0	0
HTA4_18	0	0	0	0	0	0	0	0	0	0
HTA4_19	0	0	0	0	0	0	0	0	0	0
HTA4_20	0	0	0	0	0	0	0	0	0	0
HTA4_21	0	0	0	0	0	0	0	0	0	0
HTA4_22	0	0	0	0	0	0	0	0	0	0
HTA4_23	0	0	0	0	0	0	0	0	0	0
HTA4_24	0	0	0	0	0	0	0	0	0	0
HTA4_25	0	0	0	0	0	0	0	0	0	0
HTA4_26	0	0	0	0	0	0	0	0	0	0
HTA4_27	0	0	0	0	0	0	0	0	0	0
HTA4_28	0	0	0	0	0	0	0	0	0	0
HTA4_29	0	0	0	0	0	0	0	0	0	0
HTA4_30	0	0	0	0	0	0	0	0	0	0
HTA4_1001	0	1	0	0	0	0	0	0	0	0
HTA4_1002	0	1	0	0	0	0	0	0	0	0
HTA4_1003	0	1	0	0	0	0	0	0	0	0
HTA4_1004	0	1	0	0	0	0	0	0	0	0
HTA4_1005	0	1	0	0	0	0	0	0	0	0
HTA4_1006	0	1	0	0	0	0	0	0	0	0
HTA4_1007	0	1	0	0	0	0	0	0	0	0
HTA4_1008	0	1	0	0	0	0	0	0	0	0
HTA4_1009	0	1	0	0	0	0	0	0	0	0
HTA4_1010	0	1	0	0	0	0	0	0	0	0
HTA4_1011	0	1	0	0	0	0	0	0	0	0
HTA4_1012	0	1	0	0	0	0	0	0	0	0
HTA4_1013	0	1	0	0	0	0	0	0	0	0
HTA4_1014	0	1	0	0	0	0	0	0	0	0
HTA4_1015	0	1	0	0	0	0	0	0	0	0
HTA4_1016	0	1	0	0	0	0	0	0	0	0
HTA4_1017	0	1	0	0	0	0	0	0	0	0
HTA4_1018	0	1	0	0	0	0	0	0	0	0
HTA4_1019	0	1	0	0	0	0	0	0	0	0
HTA4_1020	0	1	0	0	0	0	0	0	0	0
HTA4_1021	0	1	0	0	0	0	0	0	0	0
HTA4_1022	0	1	0	0	0	0	0	0	0	0
HTA4_1023	0	1	0	0	0	0	0	0	0	0
HTA4_2001	0	1	0	0	0	0	0	0	0	0
HTA4_2002	0	1	0	0	0	0	0	0	0	0
HTA4_2003	0	1	0	0	0	0	0	0	0	0
HTA4_2004	0	1	0	0	0	0	0	0	0	0
HTA4_2005	0	1	0	0	0	0	0	0	0	0
HTA4_2006	0	1	0	0	0	0	0	0	0	0
HTA4_2007	0	1	0	0	0	0	0	0	0	0
HTA4_2008	0	1	0	0	0	0	0	0	0	0
HTA4_2009	0	1	0	0	0	0	0	0	0	0
HTA4_2010	0	1	0	0	0	0	0	0	0	0
HTA4_2011	0	1	0	0	0	0	0	0	0	0
HTA4_2012	0	1	0	0	0	0	0	0	0	0
HTA4_2013	0	1	0	0	0	0	0	0	0	0
HTA4_2014	0	1	0	0	0	0	0	0	0	0
HTA4_2015	0	1	0	0	0	0	0	0	0	0
HTA4_2016	0	1	0	0	0	0	0	0	0	0

	Counts
AcuteLym..	0
Neurobla..	39
BreastCa..	0
Colorect..	0
LungCanc..	0
Melanoma..	0
OvarianC..	0
Pancreat..	0
Prostate..	0
SarcomaT..	0

Assay Matrix: Single Cell Data

BiospecimenID	ScRNA-seqLevel1	ScRNA-seqLevel2	ScRNA-seqLevel3	ScRNA-seqLevel4	ScATAC-seqLevel1	ScATAC-seqLevel2	ScATAC-seqLevel3	ScATAC-seqLevel4
HTA4_1_1033	1	1	1	1	1	0	0	1
HTA4_2_1066	1	1	1	1	1	0	0	1
HTA4_3_1030	1	1	1	1	1	0	0	1
HTA4_4_1015	1	1	1	1	1	0	0	1
HTA4_5_1018	1	1	1	1	1	0	0	1
HTA4_6_1060	1	1	1	1	1	0	0	1
HTA4_7_1036	1	1	1	1	1	0	0	1
HTA4_8_1024	1	1	1	1	1	0	0	1
HTA4_9_1057	1	1	1	1	1	0	0	1
HTA4_10_1045	1	1	1	1	1	0	0	1
HTA4_11_1021	1	1	1	1	1	0	0	1
HTA4_12_1027	1	1	1	1	1	0	0	1
HTA4_13_1039	1	1	1	1	1	0	0	1
HTA4_14_1063	1	1	1	1	1	0	0	1
HTA4_15_1042	1	1	1	1	1	0	0	1
HTA4_16_1054	1	1	1	1	1	0	0	1
HTA4_17_1048	1	1	1	1	1	0	0	1
HTA4_18_1051	1	1	1	1	1	0	0	1
HTA4_19_1099	1	1	1	0	1	0	0	0
HTA4_20_1087	1	1	1	0	1	0	0	0
HTA4_20_1090	1	1	1	0	1	0	0	0
HTA4_21_1069	1	1	1	0	1	0	0	0
HTA4_21_1072	1	1	1	0	1	0	0	0
HTA4_21_1075	1	1	1	0	1	0	0	0
HTA4_21_1078	1	1	1	0	1	0	0	0
HTA4_22_1096	1	1	1	0	1	0	0	0
HTA4_23_1081	1	1	1	0	1	0	0	0
HTA4_24_1084	1	1	1	0	1	0	0	0
HTA4_25_1093	1	1	1	0	1	0	0	0
HTA4_26_1003	1	1	1	1	0	0	0	0
HTA4_27_1009	1	1	1	1	0	0	0	0
HTA4_28_1006	1	1	1	1	1	0	0	1
HTA4_29_1000	1	1	1	1	1	0	0	1
HTA4_30_1012	1	1	1	1	1	0	0	1
HTA4_1001_4001	1	1	1	1	1	1	1	0
HTA4_1001_4002	1	1	1	1	1	1	1	0
HTA4_1001_4003	1	1	1	1	1	1	1	0
HTA4_1001_4004	1	1	1	1	0	0	0	0
HTA4_1002_4005	1	1	1	1	0	0	0	0
HTA4_1002_4006	1	1	1	1	0	0	0	0
HTA4_1002_4007	1	1	1	1	0	0	0	0
HTA4_1002_4008	1	1	1	1	0	0	0	0
HTA4_1003_4009	1	1	1	1	0	0	0	0
HTA4_1003_4010	1	1	1	1	1	1	1	0
HTA4_1003_4011	1	1	1	1	0	0	0	0
HTA4_1004_4012	1	1	1	1	0	0	0	0
HTA4_1004_4013	1	1	1	1	1	1	1	1
HTA4_1004_4014	1	1	1	1	0	0	0	0
HTA4_1004_4015	1	1	1	1	1	1	1	0
HTA4_1005_4016	1	1	1	1	1	1	1	0
HTA4_1005_4017	1	1	1	1	0	0	0	0
HTA4_1005_4018	1	1	1	1	0	0	0	0
HTA4_1006_4019	1	1	1	1	1	1	1	0
HTA4_1006_4020	1	1	1	1	1	1	1	0
HTA4_1006_4021	1	1	1	1	0	0	0	0
HTA4_1006_4022	1	1	1	1	1	1	1	0
HTA4_1007_4023	1	1	1	1	0	0	0	0
HTA4_1007_4024	1	1	1	1	1	1	1	0
HTA4_1007_4025	1	1	1	1	1	1	1	0
HTA4_1007_4026	1	1	1	1	0	0	0	0
HTA4_1008_4027	1	1	1	1	0	0	0	0
HTA4_1008_4028	1	1	1	1	1	1	1	0
HTA4_1008_4029	1	1	1	1	0	0	0	0
HTA4_1008_4030	1	1	1	1	0	0	0	0
HTA4_1009_4031	1	1	1	1	1	1	1	0
HTA4_1009_4032	1	1	1	1	0	0	0	0
HTA4_1009_4033	1	1	1	1	0	0	0	0
HTA4_1009_4034	1	1	1	1	0	0	0	0
HTA4_1010_4035	1	1	1	1	0	0	0	0
HTA4_1010_4036	1	1	1	1	1	1	1	0
HTA4_1010_4037	1	1	1	1	1	1	1	0
HTA4_1010_4038	1	1	1	1	0	0	0	0
HTA4_1011_4039	1	1	1	1	0	0	0	0
HTA4_1011_4040	1	1	1	1	1	1	1	0
HTA4_1011_4041	1	1	1	1	1	1	1	0
HTA4_1011_4042	1	1	1	1	0	0	0	0
HTA4_1012_4043	1	1	1	1	0	0	0	0
HTA4_1012_4044	1	1	1	1	0	0	0	0
HTA4_1012_4045	1	1	1	1	0	0	0	0
HTA4_1012_4046	1	1	1	1	1	1	1	0
HTA4_1013_4047	1	1	1	1	0	0	0	0
HTA4_1013_4048	1	1	1	1	1	1	1	0
HTA4_1013_4049	1	1	1	1	1	1	1	0
HTA4_1013_4050	1	1	1	1	0	0	0	0
HTA4_1014_4051	1	1	1	1	1	1	1	0
HTA4_1014_4052	1	1	1	1	0	0	0	0
HTA4_1014_4053	1	1	1	1	1	1	1	0
HTA4_1015_4054	1	1	1	1	0	0	0	0
HTA4_1015_4055	1	1	1	1	0	0	0	0
HTA4_1015_4056	1	1	1	1	1	1	1	0
HTA4_1015_4057	1	1	1	1	1	1	1	0
HTA4_1016_4058	1	1	1	1	0	0	0	0
HTA4_1016_4059	1	1	1	1	1	1	1	0
HTA4_1016_4060	1	1	1	1	0	0	0	0
HTA4_1016_4061	1	1	1	1	1	1	1	0
HTA4_1017_4062	1	1	1	1	0	0	0	0
HTA4_1017_4063	1	1	1	1	0	0	0	0
HTA4_1017_4064	1	1	1	1	0	0	0	0
HTA4_1017_4065	1	1	1	1	0	0	0	0
HTA4_1018_4066	1	1	1	1	0	0	0	0
HTA4_1018_4067	1	1	1	1	1	1	1	0
HTA4_1018_4068	1	1	1	1	0	0	0	0
HTA4_1018_4069	1	1	1	1	0	0	0	0
HTA4_1018_4070	1	1	1	1	0	0	0	0
HTA4_1018_4071	1	1	1	1	1	1	1	0
HTA4_1019_4072	1	1	1	1	1	1	1	0
HTA4_1019_4073	1	1	1	1	0	0	0	0
HTA4_1019_4074	1	1	1	1	0	0	0	0
HTA4_1019_4075	1	1	1	1	1	1	1	0
HTA4_1020_4076	1	1	1	1	1	1	1	0
HTA4_1020_4077	1	1	1	1	0	0	0	0
HTA4_1020_4078	1	1	1	1	1	1	1	0
HTA4_1020_4079	1	1	1	1	0	0	0	0
HTA4_1021_4080	1	1	1	1	1	1	1	0
HTA4_1021_4081	1	1	1	1	1	1	1	0
HTA4_1021_4082	1	1	1	1	0	0	0	0
HTA4_1021_4083	1	1	1	1	1	1	1	0
HTA4_1022_4084	1	1	1	1	0	0	0	0
HTA4_1022_4085	1	1	1	1	1	1	1	0
HTA4_1022_4086	1	1	1	1	1	1	1	0
HTA4_1022_4087	1	1	1	1	0	0	0	0
HTA4_1023_4088	1	1	1	1	1	1	1	0
HTA4_1023_4089	1	1	1	1	0	0	0	0
HTA4_1023_4090	1	1	1	1	1	1	1	0
HTA4_1023_4091	1	1	1	1	0	0	0	0
HTA4_2001_7001	1	1	1	1	0	0	0	0
HTA4_2001_7002	1	1	1	1	0	0	0	0
HTA4_2001_7006	1	1	1	1	0	0	0	0
HTA4_2001_7007	1	1	1	1	1	1	1	1
HTA4_2002_7012	1	0	0	0	0	0	0	0
HTA4_2002_7013	1	0	0	0	1	1	0	0
HTA4_2002_7018	1	0	0	0	0	0	0	0
HTA4_2002_7019	1	0	0	0	0	0	0	0
HTA4_2003_7023	1	1	1	1	0	0	0	0
HTA4_2003_7024	1	1	1	1	1	1	0	0
HTA4_2003_7030	1	0	0	0	0	0	0	0
HTA4_2003_7031	1	1	1	1	1	1	1	1
HTA4_2004_7036	1	0	0	0	0	0	0	0
HTA4_2004_7037	1	0	0	0	0	0	0	0
HTA4_2004_7042	1	0	0	0	0	0	0	0
HTA4_2004_7043	1	0	0	0	1	1	1	1
HTA4_2005_7048	1	1	0	0	0	0	0	0
HTA4_2005_7049	1	1	0	0	1	1	0	0
HTA4_2005_7054	1	1	1	1	0	0	0	0
HTA4_2005_7055	1	1	1	1	1	1	0	0
HTA4_2005_7062	1	0	0	0	1	1	1	1
HTA4_2005_7063	1	0	0	0	1	0	0	0
HTA4_2006_7069	1	1	1	1	1	1	0	0
HTA4_2006_7070	1	1	1	1	0	0	0	0
HTA4_2006_7075	1	1	1	1	1	1	1	1
HTA4_2006_7076	1	1	1	1	0	0	0	0
HTA4_2007_7082	1	0	0	0	0	0	0	0
HTA4_2007_7083	1	0	0	0	1	1	0	0
HTA4_2007_7088	1	0	0	0	1	0	0	0
HTA4_2007_7089	1	0	0	0	1	0	0	0
HTA4_2008_7096	1	1	1	1	0	0	0	0
HTA4_2008_7097	0	0	0	0	1	1	1	1
HTA4_2008_7102	1	1	1	1	0	0	0	0
HTA4_2008_7103	1	1	1	1	1	0	0	0
HTA4_2009_7108	1	1	1	1	0	0	0	0
HTA4_2009_7109	1	1	1	1	1	1	0	0
HTA4_2009_7114	1	0	0	0	1	1	1	1
HTA4_2009_7115	1	1	1	1	0	0	0	0
HTA4_2010_7121	1	1	1	1	1	1	1	1
HTA4_2010_7122	1	0	0	0	0	0	0	0
HTA4_2010_7128	1	1	1	1	1	1	0	0
HTA4_2011_7133	1	1	1	1	0	0	0	0
HTA4_2011_7134	1	1	1	1	1	1	0	0
HTA4_2011_7140	1	1	1	1	1	1	1	1
HTA4_2011_7141	1	1	1	1	0	0	0	0
HTA4_2012_7146	1	0	0	0	0	0	0	0
HTA4_2012_7147	1	0	0	0	1	1	1	1
HTA4_2012_7152	1	0	0	0	0	0	0	0
HTA4_2012_7153	1	0	0	0	1	1	1	1
HTA4_2013_7158	1	0	0	0	0	0	0	0
HTA4_2013_7159	1	0	0	0	1	1	1	1
HTA4_2013_7165	1	0	0	0	0	0	0	0
HTA4_2013_7166	1	0	0	0	1	1	1	1
HTA4_2014_7171	1	0	0	0	1	1	1	1
HTA4_2014_7172	1	0	0	0	0	0	0	0
HTA4_2014_7177	1	0	0	0	0	0	0	0
HTA4_2014_7178	1	0	0	0	0	0	0	0
HTA4_2015_7182	1	0	0	0	1	1	0	0
HTA4_2015_7183	1	0	0	0	1	1	0	0
HTA4_2015_7190	1	0	0	0	1	1	1	1
HTA4_2015_7191	1	0	0	0	1	1	1	1
HTA4_2016_7197	1	0	0	0	1	1	1	1
HTA4_2016_7198	1	0	0	0	1	1	1	1
HTA4_2016_7204	1	1	1	1	1	1	1	1

	Counts
ScRNA-seqLevel1	188
ScRNA-seqLevel2	153
ScRNA-seqLevel3	151
ScRNA-seqLevel4	140
ScATAC-seqLevel1	106
ScATAC-seqLevel2	70
ScATAC-seqLevel3	59
ScATAC-seqLevel4	41

Assay Matrix: Bulk Data

BiospecimenID	BulkWESLevel1	BulkWESLevel2	BulkWESLevel3
HTA4_1002_4006	1	1	1
HTA4_1002_4007	1	1	1
HTA4_1004_4013	1	1	1
HTA4_1004_4015	1	1	1
HTA4_1005_4016	1	1	0
HTA4_1005_4018	1	1	0
HTA4_1006_4020	1	1	0
HTA4_1006_4022	1	1	0
HTA4_1007_4024	1	1	0
HTA4_1007_4025	1	1	0
HTA4_1008_4028	1	1	0
HTA4_1008_4030	1	1	0
HTA4_1009_4032	1	0	0
HTA4_1009_4033	1	1	0
HTA4_1010_4036	1	1	0
HTA4_1010_4038	1	1	0
HTA4_1011_4039	1	1	0
HTA4_1011_4041	1	1	0
HTA4_1012_4045	1	1	0
HTA4_1013_4047	1	1	0
HTA4_1013_4050	1	1	0
HTA4_1014_4051	1	1	0
HTA4_1014_4052	1	1	0
HTA4_1015_4056	1	1	0
HTA4_1016_4058	1	1	0
HTA4_1016_4061	1	1	1
HTA4_1017_4062	1	1	0
HTA4_1017_4064	1	1	0
HTA4_1018_4066	1	1	0
HTA4_1018_4068	1	1	0
HTA4_1018_4070	1	1	0
HTA4_1019_4073	1	1	0
HTA4_1019_4074	1	1	0
HTA4_1020_4076	1	1	0
HTA4_1020_4079	1	1	0
HTA4_1022_4085	1	1	0
HTA4_1022_4086	1	1	0
HTA4_1023_4089	1	1	0
HTA4_1023_4091	1	1	0
HTA4_2001_7001	1	0	1
HTA4_2001_7006	1	0	1
HTA4_2002_7012	1	0	1
HTA4_2002_7019	1	0	1
HTA4_2003_7024	1	0	1
HTA4_2003_7029	1	0	0
HTA4_2003_7031	1	0	1
HTA4_2004_7036	1	0	1
HTA4_2004_7041	1	0	0
HTA4_2004_7042	1	0	1
HTA4_2005_7049	1	0	1
HTA4_2005_7054	1	0	1
HTA4_2005_7055	1	0	1
HTA4_2005_7061	1	0	0
HTA4_2005_7062	1	0	1
HTA4_2006_7070	1	0	1
HTA4_2006_7075	1	0	1
HTA4_2006_7081	1	0	0
HTA4_2007_7083	1	0	1
HTA4_2007_7089	1	0	1
HTA4_2007_7095	1	0	0
HTA4_2008_7097	1	0	1
HTA4_2008_7101	1	0	0
HTA4_2008_7103	1	0	1
HTA4_2009_7109	1	0	1
HTA4_2009_7114	1	0	1
HTA4_2009_7120	1	0	0
HTA4_2010_7121	1	0	1
HTA4_2010_7127	1	0	1
HTA4_2010_7128	1	0	0
HTA4_2011_7134	1	0	1
HTA4_2011_7139	1	0	0
HTA4_2011_7140	1	0	1
HTA4_2012_7147	1	0	1
HTA4_2012_7152	1	0	1
HTA4_2013_7158	1	0	0
HTA4_2013_7164	1	0	1
HTA4_2013_7166	1	0	1
HTA4_2014_7172	1	0	1
HTA4_2014_7178	1	0	0
HTA4_2015_7182	1	0	0
HTA4_2015_7189	1	0	1
HTA4_2015_7191	1	0	1
HTA4_2016_7198	1	0	1
HTA4_2016_7204	1	0	1

	Counts
BulkRNA-seqLevel1	0
BulkRNA-seqLevel2	0
BulkRNA-seqLevel3	0
BulkRNA-seqLevel4	0
BulkWESLevel1	84
BulkWESLevel2	38
BulkWESLevel3	38
BulkWESLevel4	0
BulkMethylation-seqLevel1	0
BulkMethylation-seqLevel2	0
BulkMethylation-seqLevel3	0
BulkMethylation-seqLevel4	0
HI-C-seqLevel1	0
HI-C-seqLevel2	0
HI-C-seqLevel3	0
HI-C-seqLevel4	0

Assay Matrix: Core Imaging

BiospecimenID	ImagingLevel2	ImagingLevel3Segmentation	ImagingLevel4
HTA4_1008_4028	1	1	1
HTA4_1008_4029	1	1	1
HTA4_1009_4032	1	1	1
HTA4_1009_4033	1	1	1
HTA4_2003_7030	1	1	1
HTA4_2004_7036	1	1	1
HTA4_2004_7042	1	1	1
HTA4_2005_7048	1	1	1
HTA4_2005_7054	1	1	1
HTA4_2005_7062	1	1	1
HTA4_2007_7088	1	1	1
HTA4_2008_7102	1	1	1
HTA4_2011_7140	1	1	1
HTA4_2013_7158	1	1	1
HTA4_2013_7165	1	1	1

	Counts
ImagingLevel1	0
ImagingLevel2	15
ImagingLevel3Image	0
ImagingLevel3Channels	0
ImagingLevel3Segmentation	15
ImagingLevel4	15
SRRSImagingLevel2	0

No data available.

This tab is for HTAN DCC debugging purposes only. It reviews all paths in the atlas, and summarizes:

the number of files annotated via an existing metadata file.
the number of files upload to the cloud, but not yet annotated with any metadata.

Root Path	Num Annotated Files	Num Unannotated Files
CODEX_level_2_NBL	4	1
CODEX_level_2_ped_glioma	10	1
CODEX_level_3_NBL	4	0
CODEX_level_3_ped_glioma	11	0
CODEX_level_4_exp_mat_ped_glioma	12	0
CODEX_level_4_NBL	1	0
CODEX_level_4_seurat_ped_glioma	1	0
CODEX_test	0	8
JointObj_mergePeak	0	88
Matrix_forProjection_ATAC	0	87
single_cell_ATACseq_level_1_CLEAN	240	0
single_cell_ATACseq_level_1_NBL	647	0
single_cell_ATACseq_level_1_Panleuk	0	535
single_cell_ATACseq_level_1_ped_glioma	222	0
single_cell_ATACseq_level_2	0	39
single_cell_ATACseq_level_2_NBL	84	0
single_cell_ATACseq_level_2_ped_glioma	132	0
single_cell_ATACseq_level_3_BALLMRD	0	29
single_cell_ATACseq_level_3_NBL	42	0
single_cell_ATACseq_level_3_ped_glioma	102	0
single_cell_ATACseq_level_4_clean	9	0
single_cell_ATACseq_level_4_NBL	1	2
single_cell_ATACseq_level_4_ped_glioma	2	2
single_cell_RNAseq_level_1	204	0
single_cell_RNAseq_level_1_AdditionalBMHD	0	72
single_cell_RNAseq_level_1_NBL	0	858
single_cell_RNAseq_level_1_ped_glioma	376	0
single_cell_RNAseq_level_2	45	0
single_cell_RNAseq_level_2_NBL	0	91
single_cell_RNAseq_level_2_ped_glioma	138	0
single_cell_RNAseq_level_3	135	0
single_cell_RNAseq_level_3_NBL	0	273
single_cell_RNAseq_level_3_ped_glioma	210	0
single_cell_RNAseq_level_4_clean	10	0
single_cell_RNAseq_level_4_NBL	188	5
single_cell_RNAseq_level_4_ped_glioma	3	3
snmC-Seq2_level1	0	252
snmC-Seq2_level1_new	0	456
WGS_level_1_NBL	312	0
WGS_level_1_ped_glioma	310	0
WGS_level_2_NBL	98	0
WGS_level_2_ped_glioma	0	45
WGS_level_3_NBL	15	0
WGS_level_3_ped_glioma	171	0

This tab is for HTAN DCC debugging purposes only. Atlases should please ignore.

Download Cytoscape SIF Network (DCC Debugging)

HTA4: HTAN CHOP

Total File Size

56.5 TB

Total Number of Files

6,586

Validation Errors

21

Percent Metadata Complete

58.1%

Clinical Data Matrix: Tiers 1 and 2

Clinical Data Matrix: Tier 3

Assay Matrix: Single Cell Data

Assay Matrix: Bulk Data

Assay Matrix: Core Imaging

Longitudinal Data

Longitudinal Details Plot

HTA4: HTAN CHOP

Total File Size

56.5 TB

Total Number of Files

6,586

Validation Errors

21

Percent Metadata Complete

58.1%

All Atlas Categories are supported by the Dashboard. Passed

At least one Demographics file found. Passed

Non-Demographic clinical data use same IDs as demographics file. Passed

At least one Biospecimen file found. Passed

HTAN IDs follow the SOP. Passed

Links connect. Failed: 4 errors

Synapse Entity IDs are Specified for Assays. Passed

File names follow Cancer Data Service (CDS) conventions. Failed: 17 warnings

Clinical Data Matrix: Tiers 1 and 2

View Details

Clinical Data Matrix: Tier 3

View Details

Assay Matrix: Single Cell Data

View Details

Assay Matrix: Bulk Data

View Details

Assay Matrix: Core Imaging

View Details

Longitudinal Data

Longitudinal Data

Longitudinal Details Plot

Longitudinal Details Plot